RNA id: XM_039800620.1


Basic Information

Item Value
RNA id XM_039800620.1
length 4098
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC120559134
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12860721 ~ 12886224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTGTCCTCCGTTATGAAAAGtatctttaaaaatatttttttcatgatGCAGTGCTGCTAAAAGCATTTTGGGCTTTTAATAACCTGATGGTGTTTTCACCAGAGGCAGAGATGGGACAGGGCAGCACATCATCTCCAATCCCATATTATCTCTGTTTTGGAGAAAACCATcatctgattggtcagagacaGATTAGCAGTCATTCTATAGTTGCGTGCCATCGGAGGGAGGGACCAGGCAAAACTTCCTCCTGACTCCCAGCTCAGTTTCTCTGCACGTCGGATGAAGGCACACTCTCTGCTGTGATAAGCTGTCAGGAGCCAGCCAGTGGGCAGAGAGCGTCTTGGGCTCAGGCTGGCTTTTAGAGAGCGGCTAGCACAGACGGATCAcagcacaaagacacagatTTAAGTCTGGCTCGGTGAACCTGCACTCTTTTTGCAGGTTCACTGGTGTGTCAGTCAACTGAGCGTGGGAGGAAATATGGTTGTGTTCATCCTCACAGTGGATGTCATGTCCCTCTGCTGATTGAGTGCACTAGCTCAGCTTTCATAGAAGAACCCTCTGGGCAGAGAAAGTGATGGGAGCGACCACGTTGCTGGAATGTTTTGCTTGCTCTCGGCGAATATGCTGGCTGCCACGCCCTCTTCACCTTATGAGACCTTTCCAGCCAATCCGCTGTCACCCTGCGACAGCACGGCCTCACTGGCAATtcCCTCGCATCAACGGTCACTCAAAATCAGAGCGCACCGCAAGGGACTCAGCCATGGGTTACGACAGCACCTCAGTAATGAGCAGCGAGTTGGAGTCCAGCTCATTTGTTGACAGCGAGGAAGACGAGGATGCTAGCAGGCTCAGTAGCTCCACAGAACAGAGTTCTTCTTCACAGCTGATGCGAAGACACAAGCGCCGCCGACGGAGGCACAAAGTGGCCAAAATAGACCGGTCTTCATCCTTCAGCAGTATCACAGACTCAACTATGAGCCTCAACATCATCACCGTCACGCTCAACATGGAGAAGTACAACTTTCTAGGTATCAGTATTGTTGGTCAGAGTAATGACCGGGGAGACGGCGGCATCTACATCGGCTCCATAATGAAAGGAGGCGCTGTTGCTGCTGATGGAAGAATAGAACCTGGAGACATGCTCCTTCAGGTGAATGACGTAAACTTTGAGAATATGAGCAACGACGACGCTGTGAGGATCCTCAGAGAGATTGTTTCCAAAACTGGTCCTATTAGTCTTACTGTTGCCAAATGTTGGGACCCATCTCCACGAAGCTACTTCACCATCCCTCGTGCTGAGCCAGTGAGACCCATTGACCCAGCAGCATGGATTTCACACACCACTGCTCTGACAGGACCTTACCCACACTATGGTAAAAACAACCAACCACCACCTCACTCTATGAAGCATCCATTATGTGGTAATTATGATAACCttacaacatttaaaacaattgaaAAGTTCCACTTGTCAATACTTTCTCACTCCTCTCCCATCCTAGAGTTTGATGACTTGCCTCTATCTGCAAGTAAAACAGACATGGCAACCATCGTCAAGGTGATGCAGTTGCCCGACTCTGGCCTGGAGATTCGAGACAGGATGTGGTTGAAGATCACCATCGCCAATGCTGTCATTGGTGCTGACGTGGTGGACTGGCTTTACTCCAGAGTTGAGGGATTCAAGGACCGGCGAGATGCGAGGAAGTACGCAAGCAGTCTGCTGAAACATGGCTACCTGAGACACACCGTCAACAAGATCACCTTCTCCGAGCAGTGCTACTATACCTTCGGGGACCTCTGCCAAAACATGGCATCACTCAATTTAAATGAGGGATCCAGCGGTGGAGGCTCTGAGCAGGACACTCTGGCACCGCTCCCTCCCACCAGCAACCCCTGGCCCCTGGGCGGGCAGCCATTCCCCTACCCTCCCTTTCCCTCTGCACCCCCCAGCTTCCCGCCAGGATACTCAGACCCGTGCCACAGTTTCCACAGTGGGAGCGCAGGCAGCCAGCACAGCGAGGGAAGCCGAAGCAGTGGATCCAACCCCAGCGCAGGCAAAGGTAGACTCCCCTCCCCACAGGagaagggtcaaaggtcaacatgCAGTGAGTCAGAGCCCCGCGTCCGTGGAGGGAGGCGTGGTGGGTCCGCCAGCCAAATGAGCCATCACAGCCACACCATCTCCAGTCACAGCCACGCTCGATCAAGTCACAGTCAGTTGCACAGGACTCACTCTCACTCAAAGAACAGCCACCTCTCCTTCACCTACAGCCACGCCCCCTTCACCCAGCCAGGGCCAGGGTCATGTGCCCACAGCGAGCGAAGCCATGCCTCCTCCTACGGCCCCCCAGGCTTGCCTCCCCCCTATTGTCTTGCCCATCTGGCCCCCAAGACCTCAGTGAGCAGCAGCACGCCCCCTGGAGCCCCTCCTGGGAGAGAGTTAGCAGCCGTTCCTCCTGAGCTCACTGCCAGCCGCCAGTCCTTCCAGCATGCTATGGGCAATCCCTGCGAGTTCTTTGTTGACATCATGTGACAGGTGACAGTGCCTTCAAAACTCATTGAGCACAAAACAATTCTCCCGCAAAGCCACTCAgccccttctctctttcctctcagtCGTTTGCCCCTGACCGTCTCCAAGTTCAGAATGTAGACACTGACTGGCCCTCTACCTAACCCCCTGCTATCTGTCTATCCATGTGATGTCCACGCAAAGGAATACAGGCAGCAAGAGCACAACCGGAGGGAggcttctcacacacacaagcacgggTCCTCTGTGGCGGAAAACCCTCTTTTGTATTGACGTGACGTGTACAGTTTGTGAAACGTGAGTGGTATTCAATGTGGTGATTCTTTAAAGCTGCCACGCAGACATTGTCGGGAGTGTGTACTCTACCTaggatattttcttttctgcaaGACCTTTAAGCTGGCTGGGCCTGGATCTCAATCCCCCAGACCCAGGCCTACACCTACAGCCCGCACTTAAGGACCGTTTCTCTGGGCCTAGGACTCGGAATTGATCTCCTGACTCATATCTGTGCATACAGATACAATTTAGCACGTATACACCAAACCTCTGGCCCCATTTCCTTCATACTGTGGCATTGCCACGGGCTTATTTAAGCTCTTACCTGCCTACTACTAAAAATGCTAACCTTGATCAGTTTATGATTCGTGGATTTCTTCAACTTCATAAAGGAGGCCCTGTAGCCAGCCATTAGTCTGACTAGGCTGCATATTGCATGACTGTCTCAACtgctttaaagaaaagaaattctattaatacattttgtttaaagTATTACCATTGGGGGGGAGGGCTTACTTCTTGCCAATGTTCTAAAGGAAGAATCCGTACACTGGATGGTTTTTGTGATGTTATTTATGTGATCATGTTGCATTGATGGTGTCATACTTTGTCTACTAAGGCTGACTGACAGACAATCAGACATCACCCTTTGTGAATCAGTGGCCAGTTTCCACTGTCCTAGCTGTGCTTTGTCGAATGTACCATTATTCCTGTCAGTGATTAAACCCTGAcattcacacaacacacaacaacactttggtttaaACAAATTTAAGTAAGCAGATCAACTTACAAACAGGATTGCAAACAGTGGGCACCTACCACAGCTGTGAAAGCAAACTCAAAGTGTTGAGAGGAGATACACCAGTCCTGGTTGTCTCCTTTGTAGCGAGTGTGAGCTTCGATGAAAGTCAGTGCGATAAAAGCCAAAGCCTCACATTGTGTGGTGGATATTTCTTTATGATGTAGGAGCTGTCTGTGACGTAAATCTCTTTATGATTCTCATCTGGCACCTCTTATTTTATGACTTCAAAGTGACTTCAGATTCAGATGGCCTTCAGATTCTGATCTCCTTGCAAAACAGTGGCAAACCCCTGTTGTATCTACCGAAAGTATAGTTACAAGAGGacaataacacacagacactagtTTTATGAGCacttttccatttccttttaGTATGAAACACTGTTTGCAATCAAAGCGTTCTCTTTAATTGTGTTTCTttacaaaagaagaaaagaagaataaaTTGTACATAgaaatttattatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65844 lncRNA upstream 30871 12835727 ~ 12844434 (+) True LOC120559236
TU65865 lncRNA upstream 34740 12828581 ~ 12840565 (+) True G49330
TU65847 lncRNA upstream 91517 12780615 ~ 12783788 (+) True G49314
XR_005639364.1 lncRNA upstream 142888 12726600 ~ 12732417 (+) True LOC120559802
TU65816 lncRNA upstream 197627 12674342 ~ 12677678 (+) True G49301
TU65874 lncRNA downstream 34781 12921005 ~ 12928180 (+) True G49334
TU65887 lncRNA downstream 42032 12928256 ~ 12928471 (+) True G49346
TU66038 lncRNA downstream 420616 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 479507 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 479507 13365731 ~ 13378409 (+) True G49474
XM_039800616.1 mRNA upstream 15913 12848812 ~ 12859392 (+) True LOC120559133
XM_039799295.1 mRNA upstream 27330 12845618 ~ 12847975 (+) True aurkaip1
XM_039800808.1 mRNA upstream 31910 12823348 ~ 12843395 (+) False LOC120559236
XM_039799525.1 mRNA downstream 6247 12892471 ~ 12896719 (+) True tnfrsf9a
XM_039799527.1 mRNA downstream 25552 12911776 ~ 12920803 (+) True LOC120558505
XM_039799626.1 mRNA downstream 336769 13222993 ~ 13235009 (+) True dnajc11a
XM_039799627.1 mRNA downstream 337182 13223406 ~ 13235009 (+) False dnajc11a
XM_039799628.1 mRNA downstream 351246 13237470 ~ 13243293 (+) True LOC120558583
XR_005639089.1 other upstream 216997 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 416866 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 651667 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 664896 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 778468 12092779 ~ 12096837 (+) False LOC120559364
TU66161 other downstream 646166 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1226826 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1227044 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1227044 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1678643 14564867 ~ 14567456 (+) True G49773

Expression Profile