RNA id: XR_005639216.1


Basic Information

Item Value
RNA id XR_005639216.1
length 2286
RNA type transcript
GC content 0.53
exon number 16
gene id LOC120559134
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12860721 ~ 12886224 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTCCCTTCCTGTTTTAGTGCCGAGAGAGCCACCGTAGCGACTCACACCGGAGCAGGAATACAGGCACTCACAACGCGATTATGTCTGGATTTTCGCTGGCTTCGTCCAACACACGGAGCTGCGTTCACCATCGTGTTGTGTCCAGGTTTATGTGTTAGGGACTGCTGTTATGTTATTCTACGGGTAGCTGGTCACATAGCAGGCCTGTTTATTGCGCTGCCAACCCTTGTTCCTTTCATGTGTCAATGATTGTCCTCCCCTCACTCTCATGGCGGAGACTAAAATAATATATCACATAGACGAGGAGGAGACTCCTTATCTGGTCAAACTGTCCGTCTCTCCAGAGAAAGTCACCTTAGCGGATTTTAAAAATGTCCTCAACAATCGACCGGTCAATAGCTACAAATTCTTCTTCAAATCGATGGACCAGGATTTTGGGGTTGTCAAAGAAGAGATTTCCGATGACAACGCCAAGCTGCCCTGCTTCAACGGGAGAGTAGTATCCTGGttggtcCTGGCAGAGAGTGCCCACTCTGATGGAGGATCTCAGTGCACAGAGAGCCATCCAGAGCTGCCCCCTCCTCTCGAGAGAACAGGGGGCATTGGAGACTCACGGCCTCCCTCCTTCCATGCCAATGCGGTGAGCAGTCGAGATGGCCTGGACACCGAGACGGGAACAGAGTCTCTCCTGAGCCATcgcagagagcgagagagagagcgggcACGGAGGAGGGCGAGAGAAACTGAGCtcCCTCGCATCAACGGTCACTCAAAATCAGAGCGCACCGCAAGGGACTCAGCCATGGGTTACGACAGCACCTCAGTAATGAGCAGCGAGTTGGAGTCCAGCTCATTTGTTGACAGCGAGGAAGACGAGGATGCTAGCAGGCTCAGTAGCTCCACAGAACAGAGTTCTTCTTCACAGCTGATGCGAAGACACAAGCGCCGCCGACGGAGGCACAAAGTGGCCAAAATAGACCGGTCTTCATCCTTCAGCAGTATCACAGACTCAACTATGAGCCTCAACATCATCACCGTCACGCTCAACATGGAGAAGTACAACTTTCTAGGTATCAGTATTGTTGGTCAGAGTAATGACCGGGGAGACGGCGGCATCTACATCGGCTCCATAATGAAAGGAGGCGCTGTTGCTGCTGATGGAAGAATAGAACCTGGAGACATGCTCCTTCAGGTGAATGACGTAAACTTTGAGAATATGAGCAACGACGACGCTGTGAGGATCCTCAGAGAGATTGTTTCCAAAACTGGTCCTATTAGTCTTACTGTTGCCAAATGTTGGGACCCATCTCCACGAAGCTACTTCACCATCCCTCGTGCTGAGCCAGTGAGACCCATTGACCCAGCAGCATGGATTTCACACACCACTGCTCTGACAGGACCTTACCCACACTATGGTAAAAACAACCAACCACCACCTCACTCTATGAAGCATCCATTATGTGGTAATTATGATAACCttacaacatttaaaacaattgaaAAGTTCCACTTGTCAATACTTTCTCACTCCTCTCCCATCCTAGAGTTTGATGACTTGCCTCTATCTGCAAGTAAAACAGACATGGCAACCATCGTCAAGGTGATGCAGTTGCCCGACTCTGGCCTGGAGATTCGAGACAGGATGTGGTTGAAGATCACCATCGCCAATGCTGTCATTGGTGCTGACGTGGTGGACTGGCTTTACTCCAGAGTTGAGGGATTCAAGGACCGGCGAGATGCGAGGAAGTACGCAAGCAGTCTGCTGAAACATGGCTACCTGAGACACACCGTCAACAAGATCACCTTCTCCGAGCAGTGCTACTATACCTTCGGGGACCTCTGCCAAAACATGGCATCACTCAATTTAAATGAGGGATCCAGCGGTGGAGGCTCTGAGCAGGACACTCTGGCACCGCTCCCTCCCACCAGCAACCCCTGGCCCCTGGGCGGGCAGCCATTCCCCTACCCTCCCTTTCCCTCTGCACCCCCCAGCTTCCCGCCAGGATACTCAGACCCGTGCCACAGTTTCCACAGTGGGAGCGCAGGCAGCCAGCACAGCGAGGGTCAATCATGAGCATCTTGAGTCATGCAGCGGACAGCTCTGCAGTACTGGACTGAAGGAGGAGGTAGTCCCAGGACACTGGGGGAACCGGAAGCCGAAGCAGTGGATCCAACCCCAGCGCAGGCAAAGGTAGACTCCCCTCCCCACAGGagaagggtcaaaggtcaacatgCAGTGAGTCAGAGCCCCGCGTCCGTGGAGGGAGGCGTGGTGGGTCCGCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65844 lncRNA upstream 16287 12835727 ~ 12844434 (+) True LOC120559236
TU65865 lncRNA upstream 20156 12828581 ~ 12840565 (+) True G49330
TU65847 lncRNA upstream 76933 12780615 ~ 12783788 (+) True G49314
XR_005639364.1 lncRNA upstream 128304 12726600 ~ 12732417 (+) True LOC120559802
TU65816 lncRNA upstream 183043 12674342 ~ 12677678 (+) True G49301
TU65874 lncRNA downstream 36718 12921005 ~ 12928180 (+) True G49334
TU65887 lncRNA downstream 43969 12928256 ~ 12928471 (+) True G49346
TU66038 lncRNA downstream 422553 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 481444 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 481444 13365731 ~ 13378409 (+) True G49474
XM_039800616.1 mRNA upstream 1329 12848812 ~ 12859392 (+) True LOC120559133
XM_039799295.1 mRNA upstream 12746 12845618 ~ 12847975 (+) True aurkaip1
XM_039800797.1 mRNA upstream 17326 12794947 ~ 12843395 (+) False LOC120559236
XM_039800804.1 mRNA upstream 17326 12794948 ~ 12843395 (+) False LOC120559236
XM_039800795.1 mRNA upstream 17326 12794949 ~ 12843395 (+) False LOC120559236
XM_039799525.1 mRNA downstream 8184 12892471 ~ 12896719 (+) True tnfrsf9a
XM_039799527.1 mRNA downstream 27489 12911776 ~ 12920803 (+) True LOC120558505
XM_039799626.1 mRNA downstream 338706 13222993 ~ 13235009 (+) True dnajc11a
XM_039799627.1 mRNA downstream 339119 13223406 ~ 13235009 (+) False dnajc11a
XM_039799628.1 mRNA downstream 353183 13237470 ~ 13243293 (+) True LOC120558583
XR_005639089.1 other upstream 202413 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 402282 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 637083 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 650312 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 763884 12092779 ~ 12096837 (+) False LOC120559364
TU66161 other downstream 648103 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1228763 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1228981 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1228981 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1680580 14564867 ~ 14567456 (+) True G49773

Expression Profile