RNA id: XM_039800746.1


Basic Information

Item Value
RNA id XM_039800746.1
length 6050
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120559200
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17511672 ~ 17518414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGTTTGTTATACACTGCAAATCACTGTAGGATGTTTGTTGAGCGGCACTCTCATTTGGGACGAGGAGAAAGCCGGTAGGGGCACCTTAAACATTGTCACTCGGGCGTCTCGGGATGAGGATCTGAGAAAAAGATAAGGATTAGACAGCAATGTTTTGGGTCTTCATTGATGGGATACAActttgaagaagaaaaagatcAGGAAAGTTGGAGACTCATGTTGTCGCTAAGCAGTTCACTTTGGAGTCGTGGTCTCAAGTGGAGtttctttctcatttttttGGAGGGGAGAATAGGATTAAGTAAGTGAGCCAAATTGCTCACTCCTCTGGAAGTGGTATGAACTTTTCCCCTCTGCCTTCAAATTCATACAGACTTACAAGTCAGTAGCAGTGTTAGTGTTAGAACTGATCTCTAAAAATGTTCAACTTCAAGTAGGCTAGACTGATAACTGAGAAGAAACGTCTTTTTAAGGTGGAGAGCCAGAGGGATTAGAAAGCTCGAAGAATCCGACTTCCAGAAACATGACCTCCAGACTGTATCCAGGCCCTCTCCTGGTGCTGCTCTGTCTCATCCACGGCGCTGAGGAGTCCTGTCCctctgtgtgcctctgtgtatCTGACACAGTGAGCTGTAGCTCCAGTGGTCTGGCCAAGTTACCCTTGTCCCTGCCCTCCTTCTCTGTCACCCTTGACATCAGCCACAACCATCTGTCCTGGCTGGGTGCGGGCAGTTTCAAAAGGATGCCTAGATTGGAAAACCTCCGGATGACCCACAACCAGCTGGGCTCCCTGGGCCATGGGGTATTTCGCAACGCCTCTGGCCTCAGGCACCTTGACCTGTCCTCCAACAAGCTGCATGTGGTGGAGCAACACTACTTCCAGGGGCTGTGGAGGCTGGAGGAGCTCCTTCTCTTTAATAATAAGATCACACAGGTGGAGGCCGGCACATTGAGCGGCCTGAGCAGCTTGAAAAAGGCCTACTTCAGCCTCAACCAGATCACACACTTCCCGTTCTTCTCCATCCAAGACCACAGTCACCCTTTCCTGACCATGCTGGACCTCTCGTCCAACCGTCTGAGCCGTCTGCCATGGGAGGATGTGAAAGCTTTGCCCGGGTTGGTGCAGCGGGGGCTGTACCTCCACAACAACTCTCTGATCTGTGACTGCTCCATGTACAGCGTTTTCTGGCATTGGGATCTCAGGGGTTACGACGCACTGAAGGACTTTACTGATGAGCACACTTGCACCACCTATGGGAACCCACGAGCGTCCATCCGGTTTCTGCAACACTCCCGCTTCTTCCACAACTGCACTGTGGAAAGCGCTGTCTCACTGCCAGTGACCGTGCTCCTCTCCAACGTGTTGGTTTCAGAGGGAGAAGGAGTGCATCTGGACTGCCAAACGTCCCTGAGTAGCACAGACCTCTCATTTACATGGCTCTCCCCCAGCAAGGGGTACATCACCCAGACTAGCATTAATGACACGCTAATTAGCCTATTTCCTAATGGTACCTTGGAGATCCAAGCAACCAAGGTCAATGACTCAGGTTTGTACGTGTGCACAGCTGTGGATATTAAACAGGCACTGAACGCGACCCGGGAGGTGAACGTGACGGTGTTGCTGCCTCCAGCAGAGTCATTCAACACTGGCTACACAACATTGCTGGGCTGtttggtgaccacgatctgcaTCCTCATATACCTCTACATGACTCCGTGTCGCTGCAGCTGCTGTAAACAGCCCAAACCTCCAGCTATCCCAATTGAGACTTACGACCACAGCACCCTAACTTCCGTTTTCTCCCCCTCCACTAGATCCCAGCACAAAATCCAAAATGACAAGCATGTAGCATTCATGGAGCCAATAATAAGTGAAGAAGGAACGGAATGGATACCTGAAGGTTGATACTGAACAGGGTTTTCTCTTTTCCTTATTTTGAAGCGGAAACAAAAAGACCTTTGGACAATGCAAAACTCCTTACTCAAGAATTAGCGGTGAGATGCAATGAGGAGTGAGTGTTAATGCTGTATAGGAAAAAAGAACATCAAGTCTCTTTCCCGACTGCCAGATGCACTAAAAAAGACCTCCTAAACAAAAAGCAGTAGCTCCTGTTCCAATTCTGCTCTTCCCTGTCATCTGGCCCAGTAGTCGAAATGAAAGTTTCAACTTTGGTTTATTATCCTCAGGTGTACTGACATTGCTAAATCACAGTAGAGCTATTATCAGCCCTAAAAATCAGCTAATAACTTCTCTGTGTACTGAGGTACGACACTAGGGGGAATATTTCTCGTGGGATCAGAGAGTGAATCTGGCTCACTTTTCACAGAAAGTGTTTAACGAGGATTAAAACCCCCGGAAAAACGCTGCAAGTTCATGACTGTGATAGACTGCAGGAAGTGAGTTCAGCCCGTGCATCTTGGTTGAGTTGAGGTGCTAAATAATTATTGTGGTAGAGCTAGGCACTGCACCAGCTGAAGATACAGCCCATATTTCTTATAATATGTTGCTTAAAACATCAAACACTCTATCCACCTCCTGAAAACTTCTGTTCCCTTTGGTTCTAATAAAAGGAGTTGTTCCCTTTAGATCAATTGCCTGATTTTGGCAATTTAGGAAAATCCATTACTTTCATATAAAAAAGAGGAATTAAGatacagctaaaaaaaaataaaaaataaaaaaaaagcaataaatgtTTCTGTGCAGAGGCCACAGATTTcagcaaacatttaaaaatcgTATCTAGCAGAAAACAGAGGTACATCCTGCAGTGATCcatcatacatatacataacgCATCTCAAACCTGTTGCATTAATCTGGCAGCCAAAAACAATGACTCTCTGTCTGCACTCTGCTTATCTAGCAAATAATACAGAAATCAGGAGTGTCAACAAgccaaaaacaaacagcaattGGACTGCTCTTCAAAGACAGAATCTCTTTGATCAAACACAGCAAAGCACTTCGAACCCTACGGAACAAACACAACTACAAAATTTGAACTGAAGTGACAAATATTTCAAGCATGATGCAAACCCCGAAGGGGCattactttgttttgtttgttaattCAGTGGAACATGCTTAAAATTACAGAATAACACACTGCAATGCCAGAGATGAATGATGTTGAAGAAGGACGTGCATGCACTGCCATGAAAGAACATAAGTGTGTGGGATGAGAACATTAAGTCGATGACATGAAAGACCAAAGAGAGCATATGGGTGGTCGGGGATGAAGGGATATTTAAAACCTGATGAAACAAATAGTAGCCTCAAAAGAAACAAATCCATTTCTTTCCATGCATCCATAATGTTTTGGATTGTAGTTTAATCTTAATGCAAACACTGAGTTGGACGAAGGATTGCATCGAGACTGAATAGGATTAGATGTAATCCTCCATATAATGTCAAAGAGAAGTTGTCAGTAACCACGCATCTCACAAAAGCAGAGCGTGTTGTTAGAGGAGGGACCTTTGATTATTTCTAAATCCTTAATTAAAACTTGACTCCTTTTAAGCCCTTAGAGACTAATATTGTCGAGCAACTTGAATGTAAATTCACAGACAAAAAAGGTGGAAATCTAAAATCAAATGGGCAGCCATGCATGAAACTAGGACAGCTAGCTCTTAGACAGCGCTGAGTTTCATCACTTTTAAACTCTCAGGGATTAAGCAAAAAAAACGGTTAGACTAAGCACTGTATTGTGATGCACCACTCTGTTTAATCACACCGCTACTGATTTATAGGTTATATTTAGAAAAAGTTTTCGGTAACACGTTATTTTAAAAGGGTGTGCAttagactgacatgacactgtcataaccatGACACGAAACCTGTCAGGAACATAAAGGAGTCTTTATGAATGTTTATGACTGTCACTCGACAGTCTTCACATTGTCTGGTGAAGTTGTCACAACACAAAGATCTCAAACAAtgctaactttgcattaaaagtgtcatCATTTCGCGAATGACATTCATGTCAACAGTCCTAAACTTCATAAAGACTCCCTCTTGTTCATGACGTGCGTCATGTCATGGTTGTGATGGTGTCATGTCATTCTTAtgcacaccccttcaaataaagtgttaccaagtTTTCCCAGTAGTAAGCAACATTCAAATTCCTGAACAAAGATGATGTaacgctgtgtgtgtgatggaacCTCTTGTATCAGAGACATGACCCGTTGTTTTTCAGAGACAGTGTATTAGAGACATTACATGGTGTGATGACTTGGGGTTAGGTTTTAGGGGATTACCACAAGGATAAAAACTAGGTGCTTTGTcaatttcaatgtttttaaatCCCTCTAATCTGGTTCTGCTCTCTGACACAGCACAAACAGCTGGGTTgggatttgttgttttttgataTGATTAGCAGAAAGATTTAAACAGAGGACATGATGTGAGCATTTCTATTCAAGGGCTTTCTATTTCACAGAGGGTCCACAGGTGACCCCAGTTATGTAACCGCGCTGCTGATTTAGGGAATCCACCTCAGTGTAGGCAGCATGTCACAGTTAGAATGAGCGAAGTTAGTATCCCAATACCATTTGATATCCAGCATTTTATATGAACCTTGTGACAGCAAGCACTTTACAGATAATGGGAGGCCTTGGCAGTGCATtttgaagagaaaaaaactaaaaaacaacagGTATAAAAAGCACaccatatattattataattattttgttCTAGCAAATTGTTATGCATATATCATTTGAAACATGAGGTGGCAAACGGACACATTTAGTTTGCTGAAATATTCTGAAATCATTCTAACATTTACACATTAGAAAGTCCTAATAATTGCACCCAAGTCTGTATCACTTAGTCTATCTGCAAATGATCCTGAACCTCTCTAATAAACCTCCCAGGTGTAAAGGAAAGACCATATGATGCTTTAAAAGATGCCCCTCGCCAAAGCAAAACACTCCATCAGACTTCAATTAGGCCTAAAGCATGCACTTCCCTTTCCAGATGAACTGTTTTCCCTAGTTCGGCTGGGCTCCAAGGGATTCAAAACCATTGTATTCAAGAATCTAATTATTGTGAAAGGGGGTGTTTTACTCTGAATAGCTTCCACTAGTGGAGGGCTGCCTTGACTGTCAACAGGCGCTATTACTGAACTGTCAAAACAGTCATCAGGCAGGAGTGGAGGCATCCAACTGTGGCAGATAAATACACATCTTTCAGATAATgtgacacccacacacacacacaacctcggTAGAGGCCCAATGTCaccaaacagacaaaaaaaaccttATTTCATTCTAATTGGACACTTTACTTGGAATATGTGCTCGAGATACACAAAAATAACTAATTTCAGAACAGTCCACCAACCAGCTATACTACACTAAGGAGGCAAGCAAGTtgcttcccaaaaaaaaaaaaaagactaaaataaaTGTGGATTGCTGTACACCAGACAACAGGCTGTTTATCATACATCTGCACTGAATATGAACGCAGGCCACTTTCTGTGTTTCCAAAGTAAGATGATGCAGCTGGATGGCCGACATGCCAAACAGAATTCTGGTCTCAGTCCCTGTCACTGTGGGGCACATTGCAAATGAATGCCTCATTAATCAAATGTATATCCATCAcatttcattgcaaaaaaaaagcattatgcAGCGATACACCTTTACCTGAGCCATTCAGCATGTTGGAAGCAGTATCCTGGCTCACTGTCTCCCTGGGGCTGTTATGGGCTTCAGTGAGTAGAATTTAGCTGGATATCATAAGATTTGACAAGCACAATGACTCAAAGTATTTTGAGGTTTATATTGTTGCTCATGGCCACTTTTCTATAACACggtcttgtctttttttcttcttctgtgttcaGCTTGTCATTTCACTTTTATTGTATCATGTGGTAATGGTGCTCCCCTTGTTATTATCTGTCACACTTCTCCACTAAAAGACAACAATGAACTGATGAAATATGGCTTTATTATTTCCATTAAAAAAAGACCTGTGCTGTCAGAGACAGTATAGGTAACCTATCTGCAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67540 lncRNA upstream 348007 17163179 ~ 17163665 (+) True G50518
TU67530 lncRNA upstream 359759 17151182 ~ 17151913 (+) True G50509
TU67525 lncRNA upstream 376182 17134688 ~ 17135490 (+) True G50505
TU67495 lncRNA upstream 406708 17098622 ~ 17104964 (+) True G50493
TU67374 lncRNA upstream 681792 16826880 ~ 16829880 (+) True G50410
TU67785 lncRNA downstream 150424 17668838 ~ 17670631 (+) True G50700
TU67813 lncRNA downstream 231871 17750285 ~ 17776236 (+) True G50725
TU67815 lncRNA downstream 257988 17776402 ~ 17835766 (+) True G50727
TU67848 lncRNA downstream 425298 17943712 ~ 17944815 (+) True G50752
TU67849 lncRNA downstream 438784 17957198 ~ 17957644 (+) True G50753
XM_039801138.1 mRNA upstream 116949 17375003 ~ 17394723 (+) True LOC120559455
XM_039801139.1 mRNA upstream 116949 17375268 ~ 17394723 (+) False LOC120559455
XM_039801324.1 mRNA upstream 188642 17272953 ~ 17323030 (+) False LOC120559551
XM_039799569.1 mRNA downstream 53365 17571779 ~ 17575143 (+) True LOC120558532
XM_039799568.1 mRNA downstream 54190 17572604 ~ 17575143 (+) False LOC120558532
XM_039801599.1 mRNA downstream 58308 17576722 ~ 17587580 (+) True slc17a9b
XM_039799338.1 mRNA downstream 167733 17686147 ~ 17689867 (+) False birc7
XM_039799337.1 mRNA downstream 167739 17686153 ~ 17689867 (+) True birc7
TU67547 other upstream 314499 17185911 ~ 17197173 (+) True G50523
XR_005639235.1 other upstream 516971 16977898 ~ 16994701 (+) True eif2d
TU67161 other upstream 1106067 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 1117440 16380044 ~ 16394232 (+) False brpf1
TU67110 other upstream 1134183 16375308 ~ 16377489 (+) False LOC120559119
TU67812 other downstream 223046 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 1163729 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 1211066 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68363 other downstream 1938077 19456491 ~ 19462114 (+) False LOC120558947
TU68439 other downstream 2249238 19767652 ~ 19768564 (+) False LOC120558920

Expression Profile