RNA id: XM_039800794.1


Basic Information

Item Value
RNA id XM_039800794.1
length 1936
RNA type mRNA
GC content 0.58
exon number 10
gene id cables2b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6729702 ~ 6774102 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGGCGGCTGCTGCCTGCGGCCAGCACAGCGCTGCGATAACGGCCGCCGTTAGCGGCAAAAAGACGCATAGTAACCGGGAACACAGTCGGAGGAACCGGGAGAACTCTCGCCGGAGACAAGCCGCTCTTTTGTTTCTTAGTAACATCTCCCTGGACGGACGACCAGTCCAGAGTAGTTCAGCCGTGCATGTAGGAAGTCGCCACCACAAAGAGACCGACTTGGAGGGAGCCGACCCCGGCAATGCCAGCTACGGGACATTCTCCGGTCTAGCAGCGGCCGCGAACTCCGGGAATGTCAACCCCTCCCCAGCACCGAGGACAGGACTCCTCAACATACCGCCTATCCTCGTCCTGCCGTCGGACACAGAGTTCAACGATGTGGGGAGCGCGGAGGTGCTGCTCGAGTGCTGCAGAGGCTCGTTCCCTTCGCCGGGGCACAGTAACCTGCTCTCGTCGTCCCCATCCAACACCAGCCTGCTACCGTCGCCGCTGGGACCGCGGAAGTCTTCCACACTGCTGTCAGTTCACAGCTGCAACTCCGTGTCCTCCTCGGAGCCGCGACAAAGgacTCGTAACCTCTCCGGCTCTCCCAGACCTCGACACACCAAGAAGATCCACTTCATCAAAAACATGAAACAGTACGACACGAGAGGCAGCAGGATCGTGCTGATCTGTGCAAAGAGATCTCTGTGTGCTGCCTTCTCTGTTCTGCCCTACGGAGAAAGCTTCTACCTTAGtGACCCTACATTAAACCACCCGAGGAGGAGGCATTCGTCTGGTAACATCTCCACCACCCTGGAGATGCTGCCGGGGCTGGAGGGCTTCCAACTGGACACCTACGGCaggtcGGTGTCGTACGCCCAGTTCCTGTACCCCACTAACGCCCTGGTGAGACACAAGCCATCGTCGACCAGCGACCTGACGCTGCAGATCCCCGTGTCCAGGAGCGCTCACAGCATGGCGGGCAGGAGCCGCCCACCCAGCAGACTGAACAGCACCGTGGGACTGGACCTgggtctggACGATGTGACAGACTACGATCCTAACCTCCTCAGTGACCCCCAGTGGCCTTGTGGGAAACACAAGCGGGTGCTGATCTTCGCCTCCTACATGACGACAGTAATAGAATACGTCAAGCCGTCTGATCTGAAGAAAGACATGAACGAAACGTTTAAGGAGAAGTATCCCCACATTAAACTCACCCTCAGCAAGATACGCAGTCtgaagagagagatgagagtaGTTGGGGAGGATTGCGGCATGCAGCCCGTCACCATCGCCATGGCGTTTGTCTACTTTGAGAAGTTGGTGCTGCAGGGTCGACTGAACAAACAGAACAGGAAGTTGGTGTCAGCTGCCTGCATCCTACTGGCTGCTAAGATCAGCAGTGACCTGAAGAAACAGGAAGTCAAACACTTCATTGATAAGCTGGAGGAGCGTTTCAGGATCAGCAGGAGGGAGCTAATATCGTTTGAGTTCACCATCCTGGTCGCCCTGGAGATGGCGCTCTACCTCCCCGAGAGCAAAGTCATGCCACATTACAGGAAGctggtgcagcagcagcagtcctaGCACCGACatctcctcccccccctcccctcccctcctcctccctgcagACTCTCAGCACCTTTCAGCATCACACTGTAGCGGTTGGACGGGTCCTCTGGGTGCCTGGCTCAGAGGCACTGATGCACCACTCTCTGCTCACAGCGCAGACACGTAGCCCATCCACACTGTGACGGTAGTGCCTGGCTCGACGGCACGGCAGCGCAGAGAGCAATGTCGGCTCTCCGCTCACCCCAAACGCCAAAGTGACAACACACTGTGACGCCTGGTGCCTGGCTCAGCGGCACCACGGGAATCACTGAAGGCCATATCTATCGCCACACTTATGTAAAGTTTCCCTCACTGGCTCGTTTGCCGAGATTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63469 lncRNA upstream 4504 6722739 ~ 6725198 (+) True G47508
TU63463 lncRNA upstream 8030 6646655 ~ 6721672 (+) False G47504
TU63465 lncRNA upstream 8030 6696577 ~ 6721672 (+) True G47504
TU63461 lncRNA upstream 40988 6632869 ~ 6688714 (+) True G47503
TU63438 lncRNA upstream 301704 6427468 ~ 6427998 (+) True G47482
TU63479 lncRNA downstream 59069 6833171 ~ 6915980 (+) True G47516
TU63481 lncRNA downstream 71946 6846048 ~ 7305481 (+) True G47517
XR_005639202.1 lncRNA downstream 97591 6871693 ~ 6889136 (+) True LOC120558815
TU63493 lncRNA downstream 100407 6874509 ~ 6875118 (+) True G47522
TU63509 lncRNA downstream 189590 6963692 ~ 6967671 (+) True G47531
XM_039801845.1 mRNA upstream 8770 6697993 ~ 6720932 (+) True ccm2l
XM_039802013.1 mRNA upstream 45791 6579186 ~ 6683911 (+) True xkr7
XM_039801741.1 mRNA upstream 227522 6493569 ~ 6502180 (+) True sox18
XM_039801479.1 mRNA upstream 336200 6346111 ~ 6393502 (+) False rgs19
XM_039800059.1 mRNA downstream 81075 6855177 ~ 6863948 (+) True LOC120558797
XM_039800060.1 mRNA downstream 81075 6855177 ~ 6863948 (+) False LOC120558797
XM_039800061.1 mRNA downstream 81075 6855177 ~ 6863948 (+) False LOC120558797
XM_039800062.1 mRNA downstream 81075 6855177 ~ 6863681 (+) False LOC120558797
XM_039800056.1 mRNA downstream 95477 6869579 ~ 6934548 (+) False LOC120558795
TU63466 other upstream 23815 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 529108 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3217218 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3446532 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 3959249 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 1338339 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1568649 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1568816 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1568816 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1594541 8368643 ~ 8380578 (+) False pkig

Expression Profile