RNA id: XM_039800901.1


Basic Information

Item Value
RNA id XM_039800901.1
length 5694
RNA type mRNA
GC content 0.50
exon number 17
gene id itih6
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8605863 ~ 8632825 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aatccacttctCAAGTCCTGTTTGTGTTGGCTGCCTGGCAGCTTTCTTATGTTGTTAACTCTCCCGCAGAGAAGTTAAATTGAACAAAGTACCACAGCGGACCAATGTTCTGTTCCATTCAGCCAATAATGGCTCTTTGGGAAAGAGCTCTCAGGGGAAATGAAAACTCGCATTTGGGAGTAATTTAGGGAATAAAACTCAGACTAGAGCATATTTTAGGAGCACTCCTACAGAGAGGGGGAAGGGGAGGTGTTTTGGTAGCGGTGCATTTTCCCCAAATAGCCGAGCAGGGGTTAACAATCCCTCATTTCTCTCGTGCACCTCGGTGGCAGCAGTCTGTGAAATTTCCAGTATGCCAGCATACAAGCTGGGAGCTGCTTTCTTTAAAGCCAGTGGGACTCACGCAACTTTCTGACTCAACTTCAtgctttttaaactttttttatttttttttcccacaacaCCAGACGGATGTTTTACTTGTATCTTAACTTCTTTCATTATCACTGCGGTGGAAGTGAACTAAGCCGAGGTGAGGGAGGGGAAAGCCGGCCCCTTGCAGAAAAGAACTTGTGTAAAATGTGAGGTATGTGCACAACTGCTGAGAACCTGAGAGCACCTCATCTGAGAGCCTAAAAGCTGAATTATCGTGGACATGATGAACCTGCGGATCCAGTGCATTCTAGTGTTCCTCACTTTGTATGTGCAAGAGGGATTAACAAGGGATTATGAAGCAAACCTGGGAGCAAATGTTCTTTTACAgAGAGTAAGACGTCAAAGCAAACCAACAAAAGCAGTGCTGAAGGTGACAGACTACCATGTGAGGTGTTCCGTGGTGTCCCGCTACGCTGTTACCAGAGTCCAGAGTTCAGTCTGGAACCAGCTGCCCATCACCAAGGAGGCGGCCTTCGAGGTGGACCTGCCCTCCTCTGCTTTCATCTCCAACTTCACCATCACCTCCAACGGCAAGGTGTATGTGGCCCAGGTGAAGGAAAGAGCTGCTGCCAGGAAGATTTACGATGCCGCCAAGAAGCAAGGAAAAACAGCCGGACTTGTTGCCACCAAagagagggagattgaCAAGTTCCGCGTGGCGGTGAGCGTGCCATCAGGAGCTCGGATGTCCTTCGCCCTGAGCTACGAGGAGCTGCTGCCTCGGCGGCTCGGCCGCTACGAGCTCAGTCTGGGTCTGAGGCCGGGACAGCCCGTGCAGAACCTCACCTTAGACGTCAGTATAATGGAGCAGACGGGCATCAGTTTCATCAAAGCCTTTCCTCTTAAGACGAGCCGACTGCTCTCCAACACTGCTCAAGGTGATGCAGAGCCTCCTGCCTCCACTCATGTGGAGCAGAGCGCTTGCTGTGCTCGGGTTCGCTACAGTCCTACTCTACAGCAGCAGAACAGCATCTCCTCTAAAGGTCTAAACGCAGACTTCATCATCCAGTATGATGTGGATCTTAAAGACCTCATGGGTGAAGTCCAGgtGTATGACGGCTACTTTGTGCATTACTTTGCACCCAGAGGGCTTCCTGTGGTTCCTAAGGATGTTATATTTGTCATTGATGTCAGTGGCTCAATGATAGGCACTAAGATAAAACAGACCAAGCAGGCCATGGGCACCATTCTCGGGGACCTGAGAGAGGGAGACCACTTCAATATCATCACCTTCTCAGACAAAgttcacacctggaagaaagGACGAACAGTCCGGGCGACTCGGCAGAATGTACAAGACGCCAAAGACTTTGTGAAGAGGATTATTGCAGAAGGATGGACAAATATCAATGCAGCTCTGCTTTCAGCTGCCCAGCTGGTCAACCCTCCATCCTCTGCCTCTTCCAGCCACCTCTCATCCCGCCGCGTCCCTCTGGTCATTTTCCTTACGGATGGGGAGGCAACCATCGGAGTGACGGCTGGCGACACCATCCTTAACAACGCCAAGAAAGCTTTGGGCTCCTCCTCTCTGTTTGGCCTGGCCTTTGGAGACGACGCCGACTTCCTCCTCCTCAAACGCCTTGCTCTGGATAACCGCGGCGTGGCTCGGATGGTGTACGAGGATGCAGACGCAGACTTGCAGCTGAAGGGCTTCTACGACGAAGTGGCCAGCCCTTTGCTGTCAGACATCCAGCTGTTGTACCTGGATGACCAGGCGTTTGACATCACCCGCTCCATGTTCCCCAACTACTTCCAAGGCTCAGAGTTGGTGGTGGCTGGGAGAGTCAAACCAGGGGTCAAGGATTTTAAGGTGTCGATGTCCGCCACTGACTCAAAGCAACATGTCAAGTTGGAGAACGATGTGTTGATTTCCAATGCAAAGGGGAACGGGAGTGAAGATTTACTCAACTGCTCAGGAGACATGGAAGGAATCTCCAGCTTTGTGCACCGTCTCTGGGCGTATTCCACTATCAAGGAGCTGCTCCTGGCCAAACTGAACGCTACTGACCCTGCAACTCAAAGGCTACTGGCGGACAAGGCCACCAACCTATCCCTCAAGTATAACTTTGTAACACCAGTCACTTCTTTAGTCGTAGTCAAGCCGGATGTAGATGAAGCAGCTCAAACTCCAACCACCGCAAAACCCACCACGGCAGCAACTACAACCACGACAGCAGTGACTACTGCCGTCACCAAAATATCTGCTGCCGGTGCTGCAAAGAAGCCCAGCGCACCTTCTAACGCCAGGCCTAACAAAAGaaaaccagaccctcctcagccACCGCCAAAGCAGAATAAAAAAATCTCATCCCCAACTTCATCACCGTCCAAGAAAACCACGACAACTTCAAGTCCCAGCTCTGTAAAAACTGCCCCAGCTCCATTCTCTGGTAAAAAGCCCACTCCTTCTCAAAATGAATCCAAAACTGCTTCtattcctcctcccccccctcctcctccgtcTCCTGCGGGTAAGATACCAACCTCTGTGCTTAATGCTCTAAAAACAGCGCCACCCCCTGCACCTGGAAAAGTCTCCACCCCCCAGCCCAAAGCCTTGAAAACAACCACTTCCTCAACAACCACCACAATGCTAACATTCACCACGAGCACCGCACCTCCACTCAGTTCAGTCACAACTGCCCCTGCGACCCTGCCAGGGAGACCCCTTACCCAACAGCCCAGTACGGCGAGGCCAGCCCTGCCTCCTGTCAAAGTGACTGTGCCCTCCACAGAggcagaaaacagcagcaaatctgcTCCAGATGTGCCTGAAATCACCACCTCCCTACCCGAGCTGTTGCCTCCGCTCACCTCTCCCACCCCGGCACCGGCACCGGCTCCGGATGTGGAAGACAACAACACTGACCTGAGCATCGCCACCTTCGTGTCGGCCACCTTTGCTCCCATGCCTGGTGTCACAGACGGGCCGCGGCTGTGGGAAGCAGCAGGGCTTCTGGATGTCTCCACTTTCATTCAGAGGAAAGATATCGATCTTGTAAAAGACTACGATGCAACCTATGACTACGACTACGATCTCAACTATGACTCCTGGGATGATACTGCAGACACTGGATCATTTGACGCTGCTCCGTCCAGACTGAGCACCATCCGGGTCTTCTCCTCATCAGTTGATGGAGATCCTCATTTCGTGGTCCAGCTGCCAAAGCTGCATCAGAACCTGTGTTTCACCGTGGACGGCAGAGCTAATGATGTCCTCAGACTGGTAGAGGACCCAGAGAGAGGTATCATTGTTGACGGCCATCTAATGGGCGCTCCCTCCAAGCACGGTGCTGAAGAGCGCCCGCGGACATACTTCGACCGGCTCACCATTTCCTCGGCCACGGGCGGCTCCAGTGACATCATGATCACCCTGTCACTGGACGCTGTGGTGGTGGAAGGGGAAGGGCGGGACCGTCTTCCCATCAATCAGCAGGGGTCGGTGATGAGGCAGGGGGTGACCGTTGCCGTGGACAACCATCAGAGCTGCTGGATCGAGCTGGCCAAGGATGTGCGCTTCCTGGTTCTGTTCCACCACTACAAACAGCCCAGCTACCTGCAGATGGCTCACCTGGGCTTCTACATCTCAGATGGGCGGGGGCTGTCTGCTTCAAGCCAAGGCCTGCTGGGCCAGTTTCAGCATGCTGACATGCGTGTGACAGCGGTGAAGGATTATCTGGGTGGAGGTGCTCGCTATGAGGCGGTTTCAGCCAGGGGGACCCTGAGGTGGGGATCGGAGAGCATGCTGCTCACCTTGCAGGACAAGACGCTGAAAGACACGGTGCGGAAACGCCACATAGGCAAGTGTTGGGTGGTGCCCaagggagagatagagagactgcTGGGTCACCCGTACGAGAGCTACGTGGTGAATCATGGGTAACTCTAGCCGAGTCTGCTCCGCCTTGTTGCCTCTCTGCTGCACAGCTCAGGTCACAGCAATTCTCATGGCGTTGttaatggacaaaagcatgaaCACGAACTGGGACTCCGTGAGGCTAAAATGACACGTCATATGCCACACATTgtctaataataaaaataataataataacacaggTGTGCTTACAAAAGAGGGTGACACTTTATGAAGCAGTAATGAggaatagggctgcacgatatgagtaAAAAATccaattgcgattattttgactgatattgctgTTGCGATATGATTCAAGATATGGGATTTTGTATcgttctcattttcattgacaattattaaaatgttttttttttgttttttttttcaagatttttttgggggcatttttaggcctttattgacaggaaagAGGGGGAAGGACATGCAGCAACGGGTCAGAAttcaaggactgagccttttcacatggggcgcacgcttaaccaggtgagctatccaggcgcccctataatgtgatttttgcgaggttCTGTACCAAACAAGGACTTTTTTCTTTAGTccgtaggataggatttgtaggccaggctgtctctgcagcaccacaatacttatttcagaatggtttgacacagaTGTTGCCTTTTACAAATATTGCCCCGTCCCCCCCCTGCGATTTTGATATTGCTCtggtccatattgcgatttcgataaaatcgcgattaattgtgcagccctaatgaaGAAGTATGGTTGGACTAATATAGTGAAGGACTGAACAGTTCTCCGTCAGTGAGTTGGACTTGGATTCAAGCAGTGTGTTCTGTATCTGAAACAGGCACGGTGTCCTGCTGTTGGCATGGCAACCACAAAATGTCCATTTGTGCTGCAGCGGTTTGCGCTTCATCCAAAATGTCTCGCACACTAACTCTGTTCACAACCTCGAAGATGTTTATCAGATTATTCTTATATTTTGTCGTGGAATGATTACTAGGCAAAAGCCAGATTCTTGTCATTGTTCAGAACCGCATCATTCTGTAAGTTGTATGTTTTTAGTGCAAGTGTATATAAAACATTATTGTATGTATCGACACAAAACTCAGCTGGATGTTCAGgaagaaacacaaaacagaaatcGGGGTCTTTCCAGGTTTGCcatgtgctttttatttttctatcatttcattcatagtttaattcattttatttgttacACAAGACATTAGGCATTGCTCACGTACTAGTGATCAAACAAGGACAGTAAGTTTTCTACTACTCAGCCTGACACTATTTTGAACTTTTGTCAATTTCAAGGGATATTGTCAATAGTGGTTTCCAAAAAGGCCAAACTGGATGGAAATTAAAAGAGTACAACCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64185 lncRNA upstream 73062 8532596 ~ 8532801 (+) True G48063
TU64170 lncRNA upstream 108618 8478123 ~ 8497245 (+) False LOC120559763
TU64151 lncRNA upstream 157549 8448107 ~ 8448314 (+) True G48039
TU64130 lncRNA upstream 224134 8381491 ~ 8381729 (+) True G48018
TU64129 lncRNA upstream 224435 8381087 ~ 8381428 (+) True G48017
TU64197 lncRNA downstream 24253 8657078 ~ 8662891 (+) True LOC120559293
TU64203 lncRNA downstream 41648 8674473 ~ 8677331 (+) True G48075
TU64209 lncRNA downstream 57878 8690703 ~ 8700088 (+) True G48079
TU64300 lncRNA downstream 81494 8714319 ~ 8714568 (+) True G48158
TU64302 lncRNA downstream 83062 8715887 ~ 8716184 (+) True G48160
XM_039800905.1 mRNA upstream 105 8562053 ~ 8605758 (+) False LOC120559284
XM_039800904.1 mRNA upstream 105 8562053 ~ 8605758 (+) False LOC120559284
XM_039800903.1 mRNA upstream 105 8596250 ~ 8605758 (+) False LOC120559284
XM_039800906.1 mRNA upstream 105 8596469 ~ 8605758 (+) True LOC120559284
XM_039800909.1 mRNA upstream 35532 8569081 ~ 8570331 (+) True LOC120559288
XM_039800907.1 mRNA downstream 12953 8645778 ~ 8654316 (+) True LOC120559286
XM_039800916.1 mRNA downstream 21587 8654412 ~ 8662452 (+) False LOC120559293
XM_039800917.1 mRNA downstream 24242 8657067 ~ 8662452 (+) False LOC120559293
XM_039800854.1 mRNA downstream 444928 9077753 ~ 9121912 (+) True LOC120559255
XM_039800356.1 mRNA downstream 567927 9200752 ~ 9210559 (+) True pfdn4
TU64120 other upstream 225285 8342918 ~ 8380578 (+) False pkig
TU64121 other upstream 225285 8368643 ~ 8380578 (+) False pkig
TU64119 other upstream 225471 8342751 ~ 8380392 (+) False pkig
TU64124 other upstream 225471 8342918 ~ 8380392 (+) False pkig
TU64122 other upstream 225471 8368643 ~ 8380392 (+) False pkig
TU64205 other downstream 47457 8680282 ~ 8687964 (+) False G48077
TU64206 other downstream 49100 8681925 ~ 8687964 (+) True G48077
TU64207 other downstream 51973 8684798 ~ 8687964 (+) False G48077
TU64306 other downstream 83942 8716767 ~ 8726552 (+) True G48162
XR_005639234.1 other downstream 357662 8990487 ~ 9118201 (+) False LOC120559255

Expression Profile