RNA id: XM_039800919.1


Basic Information

Item Value
RNA id XM_039800919.1
length 2353
RNA type mRNA
GC content 0.42
exon number 9
gene id LOC120559296
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13642629 ~ 13649896 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGGATGTATTGGTATTAAGAGATTTTTATGAACGTGGACGCATCTTCCGCAAATACGTAATTTTAGACATGCGCACTCTTCACTGCCAACAGCTTTGTTGGGCTGCTGGTTGCTAGCTACATGCTACTGCTAACTAGCAAGTAAGATTTCCTGCCTGTGACTGGACACAGCTATGGACATCGACGCGTTATTGGAGGCGTTTCAAGATTTTGAGAAGAAAGGCAAGAAAGAGACCTGTCCGGAACTAGAGCAATTCCTGTGTCATGTTGCCAAGACGGGGCAGCCAATGATCTCGTGGTCACAGTTCAAAACATACTTTGTGTTTAAgttggaaaaagtcatggatGATTTCCACGCTTCAACACCAGAACAGAGAGCACCACATAATCCCAATGTAGATTATATTCCCTTCGAAGAGATGAAGACGAGGATCTTAAAAATAGTGGATGGTTACAATGGAATCCCATTCACCATCCAGCGTCTATGTGAACTCCTTACAGACCCCAAGCGCAACTATACAGGAACAGAGAAGTTTCTCATGGGTTTAGAGAAGAATGTAATGGTGGTCAGCTGTGTGTACCCCACATCAGAGAAAAATGGGGCATCCAGTGTAAACAGAATGAATGGAGTGATGTTTCCTGGTAACTCTTCTCTATATTCAGACAGtcGAAATGTAAATGGTCCAGACACACCAAAACCGCTCACCAGACCAAAATTGTCATTGTCGGCTTCACTTTCCACCAACGGGCTGCCTGACTGTGCAGTCAGTAAAGAGCCAGAGCCAACCACAGAAGAGGTGGAGGAGCACCGTATCGGTGATTCCTCACCATCAGAGGGTGAAATTACACCAAACAGTGGGATAAAGAACAAGCAccccgaggaggaggaggattcTGATGCTGGTAAACATGAGGTCAAGAGGCTcaagtttgatgaaaaagaggaggatgaaacagaaagtgaagaaaacAAGTCGTCTTGTTGTAAAGAGTCAGAGAGCTCGTCGGAAGAACCAGAGTCTTCAGAAGAACCATGTGGTCAAGAGTACAAAAGTGGAACATCTAGTGACACACCTGCTATTTCAGAGGATCATGAGCCCAGCAGCACACAGGCAGAACCTTCTGAAAGGGAAGAAAACTCATCTGAGAGGGGGGATGTCCACAGTCTGGAGAAGGACAGCACTGTGGGTCACCCTGAGCAGCCTGCTCCATCAGAGAAGGGTACAAGCTTTGAGCAGGAACatggggagagcagcagcagcagcagcagtagtagcagcagtagcagttgTAGTGATGGAGAAGGCCTAGCCAGCGAAAAGCAGGTCCCCTCTTCTAGTAGTTCACCTGACTTGTCAACAGAGGGCAAAGCTGACAGTTCAAACGGCGCAAAGACTGCAATAGAGCCTGGGGAACATGACTAAATTGAAACCCAGCTGACTTATTTTTACACTGTATGATACCACACCAAGGGGTATATCTGTAGCACTGTGGACCTGTGGACCAGGAGCAATGTGAACCTTGAGATTCTACACAGAGGGATCTTTTTGTCTGCTTCAATTTCAAATACTCAAGTCCACACATCACCTGGTCTTTAAACTGGAAGGACATGATTTAAAGATTATGGAGACTCTGCTTTTTTTCACTGTTGACTAAACAATTTtctaatccttttttttttcttttctttttttctgatttttatATAAGCGTTATAATTTAACCCTGATAACTGATGTATTCAGTGATTTCATTATTCTTAAGTCATTTGTCAAGCATTTCCAAAATGATATATTTGACAGTTTGAGTTGTTTTGGCCTATAGTATAGTTGTTTTGACTATTTTTCTGATGAATATGTGTCTCGCCTGTGTTGAATCAGAACACATGCCATTAAGAATGTGAAGCGACACTTCACAAACATCTGTGCTTTTTCTGTTAAGCACACAGCATTCAAATGTATTTCTTATTAACATTATATTGCACTTGTTTTCTTGAAGAATGTGAACCATTTCAAAGTTTTGCTTTGTCACTGTATGAagacaatacaaacacacaatttGCCAGAAGTTAACCAGTTGGGTTTGATAGAATATTGGTTTTTGGCTTAAGGGAAGCCATTTCTGCATCAAAATCTGTTAACAGGACACAAGATAGTTTAACACTTGTTATACATTAGTTATACAAATGTCCCTTTTGATAGCTTGGATTTTTACAGTACGCATCTGTAAATCCGTTTTTGTAGACTTGTAATACATATCCACTGCCTTCGTAAAACTGATAATCGCTGGAAGTTGAATGCCTGAGCTTGTATCATAGTATTCATGGAAAGCAATAAATACTAAAAATGTAAA

Function

GO: NA

KEGG:

id description
K15425 PPP4R2; serine/threonine-protein phosphatase 4 regulatory subunit 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66203 lncRNA upstream 755 13616877 ~ 13641874 (+) True G49562
TU66214 lncRNA upstream 3536 13636866 ~ 13639093 (+) True G49572
TU66127 lncRNA upstream 195894 13445139 ~ 13446735 (+) True G49508
TU66121 lncRNA upstream 209412 13432599 ~ 13433217 (+) True G49502
TU66078 lncRNA upstream 264220 13365731 ~ 13378409 (+) True G49474
TU66235 lncRNA downstream 13991 13663887 ~ 13724990 (+) False LOC120558697
TU66236 lncRNA downstream 75192 13725088 ~ 13728097 (+) True G49585
TU66237 lncRNA downstream 75192 13725088 ~ 13732249 (+) False G49585
TU66244 lncRNA downstream 99662 13749558 ~ 13750842 (+) True G49591
TU66249 lncRNA downstream 108691 13758587 ~ 13992115 (+) True LOC120558703
XM_039801319.1 mRNA upstream 37194 13564625 ~ 13605435 (+) False LOC120559547
XM_039801315.1 mRNA upstream 37194 13565565 ~ 13605435 (+) True LOC120559547
XM_039801316.1 mRNA upstream 37194 13565566 ~ 13605435 (+) False LOC120559547
XM_039801318.1 mRNA upstream 37194 13579688 ~ 13605435 (+) False LOC120559547
XM_039801317.1 mRNA upstream 37194 13583490 ~ 13605435 (+) False LOC120559547
XM_039801872.1 mRNA downstream 2472 13652368 ~ 13654660 (+) True guca1b
XM_039801870.1 mRNA downstream 5657 13655553 ~ 13657376 (+) False oard1
XM_039801871.1 mRNA downstream 5817 13655713 ~ 13657376 (+) True oard1
XM_039799842.1 mRNA downstream 8836 13658732 ~ 13724987 (+) True LOC120558697
XM_039799847.1 mRNA downstream 8836 13658732 ~ 13724987 (+) False LOC120558697
TU66161 other upstream 107707 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 758342 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 984321 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1184190 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1418991 12223567 ~ 12223638 (+) True trnae-cuc_14
TU66274 other downstream 463154 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 463372 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 463372 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 914971 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 924646 14574542 ~ 14577572 (+) True G49776

Expression Profile