RNA id: XM_039800957.1


Basic Information

Item Value
RNA id XM_039800957.1
length 3697
RNA type mRNA
GC content 0.54
exon number 19
gene id LOC120559318
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 19241532 ~ 19327554 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGGACCCGATGGCAGGACAGGTCATGAGAGAGCTGAGCCGATGAGATCATGGAGCCTGCGCCGAGGTCGGACAGGGTACGGTTAGGACTTCACGGTGATGGAGAGGTACCTGTCCGAATCCATGATGTCCTGCACTGTAGCTGAAACCACAATACCTCTGGCCTTTGTGTCTGGGAGCCCTGTAGCCAACAGTCACTGCCATCTTCTTCTAATAGAACTAAATAAGACTCAGCCTAAAGCCCTAAACAATCAGGGATGGACAGGTGAAAACTAAGAGGCCGAGATGTGGCCTTTATTCTAAACCTTGTCTTTTATTCTGGTTCCGTAAAGGGACATAGAAATATCCCCAACCTTAACAGTTTCATCTCAGAAGTCCACTTTTGCCATATAAAAATAATGCCTTTAAACATTAGAGCCAAGCCTGCTCAGAGCAAGCTGTCTGCTGCCCCAAAGAGTAGTGGGCACACTGATGGCAGCACATCTCATGCACGCTTTTCCAGATCCCCCAAACAGGGCAAAGGCAAACAGGCTGTAAGCTCAGCACCAGGCTCCCGCTCGGGGCTAGAACCAGGCTCTGTGTCAGGGGGTGTGCCTGCCCCAGCATCTAAATTGGCAGGAGGTCAAGGCTCTGTGTCGAAGCCAGCTTCAAAGATCAAACCTTCCACAGCAGCAGACAAAGGAGCAAGTCGTGGTTCAGCGACAGCTCCAGGGGGTAAAACCCTGTCTATGGAGAACATCCAGTCTTTGAGTGCTGCCTATGCCACATCAGGCACCATGTACCCCTGTGAGCGAGATTCCTTGGAACCCTCTGGTGGGTACCCGAAAGGCACCATGACGCTGGGCAGGAGTACCAGCCGCTCCTCCTACACTAACCGAACACCTGCCATGGGCAGTACCCCAAACATCACCTCCTCTGGGTTACATCAACAGTCAGACCCCTATGGAGACCAAACCTTGCATCCTGCAAGGACTTCCAGTCTGCGGCACCAGTCTGGGAGACATCCACAGGCATTGGATTCGGCTGGACGGGGAGAGGTTTCCTCGTTTGATCTACAGTCTCAGCTGAGGGAGCTGCAGAGGGAAAATGACAACCTGAGGAGAGAACTGGATGTAGGGAGGGATGGAAGGACGGGCCCCAGCATGAACAATGTCAACTTCTGGACCCCAGATGTGAAAAGAGACAAGGGGGTTCGGCGGGAGGAGGGAGTGAGGACCTCGGTTCTGAAGGACCAGTACAGGACAAACCAAGAGGATTTGCAACCTGGGGATATCAGAAGAAACAAGCAGCTTCCGTTGACAGTTCAGGAGCTACAGGAGGAGCTGAGGGCTCACAGAGAGATGAACAGCCGCTTGCAGCAACAACGACAGCAGGGGAACTCTGGCTCCCATCGAGAAATCCATACAGACCAGGACCACAGAGGGGGGCTCAGCCCTGGCCACAGCCCCAGACAAAGCTCCAGCAACCTGCATAGTCCTGGTCCAAAGAATAGCCCGAGAGCCAGCCCATCCAACACCTACAATCCGAGGCAACAGGAAGCTGATGTCATCATTCACAGCCCTGGTTATGGCTGTAACACTGCAATAGCTGTGCAGAGAATCAGCCCTGCCAACACCCTTCAGCCTGGGCGGAGGAACGGCCCAAATCAGCCCCTATACACTCCCAGCCAAGGTCCGGTGGTAGCTCCCAGCTCTGGTTCACTCCGGCCCTGCAGCCCCTGCCAGGTGCCCGGGTGTGACGGCTTCTTCTCACCTCCGCCTCTGGATCCATCAGAGGAGAATGTCTTCCGGATGCAGGCAGAGCATGAGCGGCAGGCCAAAGAGCTGTTCCTGCTGAGGAAGACCATGGAAGAGATGGAGATGAGAATCGATTCTCAGAAACAGACTCTGGGCGCCCGGGACGAGAGCATCCAGAGGCTGCTGGAGATGCTTCAGGGCCAAGGCCAAGGTCAGGGACACTGGGGTCGGGGACAGCCGACAGGCATCGTAACCATGGCAGCACAGGAGGCTGAATCGCAGCTGGAGAACATGCATGTGCGAGAGGAGCTCCATCGCCGGAACCAGCTCCAGGCCGATCCGGCCAAGACCAGGGCTCTGCAGACTGTCATTGATATGAAGAACACCAACGCCCCTTTCTGTTTTGATCCTGACGTTATCTGGCAGGACACAAAGATTTCTTCCCTGGAGAGGAACATCAGAGACTTAGAGGATGAGGTCCAGATGTTAAAGACCAGCGGCCTGCTGCACCCCGATGACAGGCACAATGAGCTCAAGCATGTGGAGGTCTACAAGAGCCATTCTAAATTCATGAAAACTAAGgAGCAGGCCTTGTCACCATGTGTGTCTTCCATCAGAACAGCTCCcaccttcttcctccctccccaACATCCCTGGATCACAGAACAAGCAGAAATAGAGCAGCTGAAGCAGGAGCTGAACAGGAAGGAGtcggagatgcaggccctgcaGACCAAACtagaaacactgaccaatcagaattcAGACTGCAAGCAACACATCGAGGTGCTAAAGGAGTCGCTCAGCGCCAAGGAGCAACGGGCCAATACACTGCAGACAGAgGTAGATGCTCTGCGGGTGCGTCTGGAGGAGAAGGAGCAGCTCCTGACCAAGAAGACcaagcagctgcaggacctgacTGATGAAAAGAGCACACTAACAGGAGAGATCAGAGACATGAAGGACATGCTGGATGTCAAGGAGAGGAAGGTTAATGTCCTGCAGAAGAAGATTGAGAACCTGTTGGAGCAGTTAAAGGATAAGGACAAACAGCTGGCTGGGTTGAGGGAAAGGGTCCAGGGTCTTCAAACAGACTCCAGCAACACAGACACAGCCCTGGCCACACTGGAAGAAGCCCTATCAGAAAAGGAGCGAGTGATTGAGAATCTGCGCGAGCAGAAGGAGCGGGAAGACAGGGTTCGGCTGGAGGAGCTGGAACAGATGAGGAAGGAGAACCAGGTATTAAAGGACAAACTTTCAGCCTTGCAGCCCCAGAATCTGTCCCAGAGTCAGCCTGCTAACCCAGTCCTGACACAGAACCAGAGGCCTGATGGAGAGGTGCCAGCCAAAGTAGATGGGCTACCAGCAGGAAGCCCAACAacacaaaacacGGAAGAAGTAGTCCGGAAGTGTCCAGACATCACAGATCGTCTGAGGCTTCTGGAGCAGGAAGTTGCTCGCAACAAAGAGGAATCTGGGAAGTCGCAAGTGGAGGTGGAGAGGCTAATGACAGCTCTGAGGGATGCTGAGATGGACAAATCGTGCAAGGAGAAGAAAATTGCTGATCTTGAGAGACCTGGGCAAATCAACTCTCCTAACATCCAGAAGCAGACAGTGGCGAGTGAGATAAGGAAAGATGCCCTGATTGATGGACATCCACACTCTTTATCACAGAAAACTTCCTCTTTCAGCTTCCCAGGATGCCATGTGGGAGACGGCGGAGCGGATCAGGGAGTTGGAGAGGGCACTGAGGGAGAGCATGAACACCTCCGCACATAGAGAGGCTCTCTGGGCGCAAGAGGAGACTGCCCGTGTTCAGGCCCAAAGACAGTTGGAGGAACTGATGGGGGCTTTGGAGAAGACACGCCAGGAGCTGAATGCCACCAAGATGCATCTATCCTCCACTCAGCAGTCCCTGCATGAGAGAGACGGACACCTTAATAGTCTTCGCCAGGAGAGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU68184 lncRNA upstream 385006 18855367 ~ 18856526 (+) True G51028
XR_005639332.1 lncRNA upstream 404101 18835280 ~ 18837431 (+) True LOC120559607
TU68172 lncRNA upstream 483135 18758044 ~ 18758397 (+) True G51017
TU68147 lncRNA upstream 553239 18686786 ~ 18688293 (+) True G50994
TU68129 lncRNA upstream 557054 18682143 ~ 18684478 (+) False G50983
TU68358 lncRNA downstream 112133 19439687 ~ 19441326 (+) True G51155
TU68370 lncRNA downstream 243639 19571193 ~ 19608956 (+) False G51165
TU68372 lncRNA downstream 260681 19588235 ~ 19590976 (+) True G51167
TU68374 lncRNA downstream 263914 19591468 ~ 19593624 (+) True G51168
TU68369 lncRNA downstream 277224 19604778 ~ 19608956 (+) True G51165
XM_039800958.1 mRNA upstream 923 19235549 ~ 19240609 (+) True tlr9
XM_039800954.1 mRNA upstream 6146 19225284 ~ 19235386 (+) True apeh
XM_039800951.1 mRNA upstream 6147 19225260 ~ 19235385 (+) False apeh
XM_039800953.1 mRNA upstream 6147 19226014 ~ 19235385 (+) False apeh
XM_039800952.1 mRNA upstream 6147 19226976 ~ 19235385 (+) False apeh
XM_039800962.1 mRNA downstream 39229 19366783 ~ 19415190 (+) False wnt5a
XM_039800960.1 mRNA downstream 75578 19403132 ~ 19415190 (+) True wnt5a
XM_039800961.1 mRNA downstream 77921 19405475 ~ 19415190 (+) False wnt5a
XM_039800959.1 mRNA downstream 77921 19405475 ~ 19415190 (+) False wnt5a
XM_039800317.1 mRNA downstream 128923 19456477 ~ 19463712 (+) True LOC120558947
unassigned_transcript_226 other upstream 511981 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68128 other upstream 555230 18682143 ~ 18686302 (+) True G50983
TU67812 other upstream 1468948 17741460 ~ 17772584 (+) False LOC120559485
TU67547 other upstream 2044359 17185911 ~ 17197173 (+) True G50523
XR_005639235.1 other upstream 2246831 16977898 ~ 16994701 (+) True eif2d
TU68363 other downstream 128937 19456491 ~ 19462114 (+) False LOC120558947
TU68439 other downstream 440098 19767652 ~ 19768564 (+) False LOC120558920
TU68517 other downstream 668957 19996511 ~ 20000438 (+) True zgc:194242
TU68519 other downstream 668957 19996511 ~ 20000438 (+) False zgc:194242
unassigned_transcript_228 other downstream 993957 20321511 ~ 20321582 (+) True trnah-gug_9

Expression Profile