RNA id: XM_039800972.1


Basic Information

Item Value
RNA id XM_039800972.1
length 1378
RNA type mRNA
GC content 0.41
exon number 6
gene id ognb
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17106791 ~ 17108823 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggAAATGTACCCTGCTCACAAGTACCTCAGATCCCAACCTAGCAGACAGACACTCTTCTCTCACAAGCAACTAAGACACAATGATGCAGTTAAGGACTTTAATTTTTACATCAGTTTTGCTCCCATGGATACTGTCTTCTGCAGCAAAAGAAGAATACGTGGAAGTCAGAAAACCTACGACCGACACTGTAAACTTTCCAGACTATGACACCCTTCGAGACTCGGATACTGACCCAGCAGCAGCTCCAAGAGCTGATGAGATGCCgacatgtctgctgtgtgtttgcCTGAGTGGATCTGTTTACTGTGAGGAGGTGTCCCCTGAAATGTCAGCCATTCCAGCACTGCCAAAGGAAACAGCACATCTCTATGCACGTTTCAacaaaatcacaaaaataaGAAACAAAGACTTTGCAGACATGGCCACATTAAAAACAATTGACCTTACTGGCAATCTCATCGCTGAGATAGAAGATGGAGCTTTTTCAAAACTTTCAGATCTTGAGGAGCTCATTCTTGCAGAAAACAGACTGACTAAACTTCCCATGCTGCCCACCAAGCTGGTGTCATTCAATGCCAATTTCAACCATCTTAAAACCCAGGGTGTGAAGGCAACTGCTTTTAAAAAACTCACGAGACTGGCATATCTTTACCTTGGAAACAATGAACTGACAGCAGTGCCCCAACTTCCAGAGTCTCTTCACGCTGTGCACCTGCATAACAACAATATCTCCACAGTAACAGATGAGACATTCTGCAAAGGTAACAGTCACTACATCCGGACCAACTTGGACGAGCTGAGACTGGACGGGAATCCTGTCGTGCTGTCGAAGCACCCAAACAGCTTCATCTGTCTGCAGTCTCTCCCTATCGGATGGTACAACTGAAATAACCAAAGCATGCTTTCGACTGATGTCAACCTtgggttgggggggggaggggggggatgaAGGATGCAGATACACAGATAGTAAAAATACCATTTGCAAAATGCAGTTCTTAATTTAGATTTTATATGCACTCAAATCTACCGTACAGTTCAAGACTTTTAACAGTTTTTcattatcaaacaaaaaacgtATAATTACAGAACAGCGGTATTTAAACaagcttgtgtttttttgtttcttatcAAATTCTATCTACCAGTAATGAACACATCTGTGCAAAATCATCCAAgattatttcttgtattttttccttttgttaCAATTTGGTTGAGACTGATTTGTCTTGGCAGGTGCTATACAATGTTTGAAACATAACACATCAAAATAGACATGTCAAATCAATAGGAGACCATTGTTATTTCATCGTTTCATTTGATTTCTTTGAACTAAAGATCATATTAACAATAAACTTGCATGTTTCTCCATCA

Function

GO: NA

KEGG:

id description
K08126 OGN; osteoglycin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67495 lncRNA upstream 1827 17098622 ~ 17104964 (+) True G50493
TU67374 lncRNA upstream 276911 16826880 ~ 16829880 (+) True G50410
XR_005639303.1 lncRNA upstream 423257 16680581 ~ 16683534 (+) False LOC120559512
XR_005639304.1 lncRNA upstream 423257 16680581 ~ 16683534 (+) False LOC120559512
XR_005639302.1 lncRNA upstream 423257 16680586 ~ 16683534 (+) True LOC120559512
TU67525 lncRNA downstream 25865 17134688 ~ 17135490 (+) True G50505
TU67530 lncRNA downstream 42359 17151182 ~ 17151913 (+) True G50509
TU67540 lncRNA downstream 54356 17163179 ~ 17163665 (+) True G50518
TU67785 lncRNA downstream 560015 17668838 ~ 17670631 (+) True G50700
TU67813 lncRNA downstream 641462 17750285 ~ 17776236 (+) True G50725
XM_039799616.1 mRNA upstream 27497 17069420 ~ 17079294 (+) True LOC120558576
XM_039799617.1 mRNA upstream 27497 17069420 ~ 17079294 (+) False LOC120558576
XM_039801552.1 mRNA upstream 38779 17021715 ~ 17068012 (+) True slc12a5b
XM_039801550.1 mRNA upstream 44928 17021715 ~ 17061863 (+) False slc12a5b
XM_039801551.1 mRNA upstream 44928 17021715 ~ 17061863 (+) False slc12a5b
XM_039800942.1 mRNA downstream 32881 17141704 ~ 17150065 (+) True LOC120559311
XM_039800943.1 mRNA downstream 34593 17143416 ~ 17150065 (+) False LOC120559311
XM_039801476.1 mRNA downstream 57856 17166679 ~ 17174370 (+) True abtb1
XM_039800134.1 mRNA downstream 79339 17188162 ~ 17193594 (+) True LOC120558844
XM_039800426.1 mRNA downstream 85137 17193960 ~ 17204623 (+) True LOC120559003
XR_005639235.1 other upstream 112090 16977898 ~ 16994701 (+) True eif2d
TU67161 other upstream 701186 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 712559 16380044 ~ 16394232 (+) False brpf1
TU67106 other upstream 727147 16375308 ~ 16379644 (+) False LOC120559119
TU67547 other downstream 77088 17185911 ~ 17197173 (+) True G50523
TU67812 other downstream 632637 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 1573320 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 1620657 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68363 other downstream 2347668 19456491 ~ 19462114 (+) False LOC120558947

Expression Profile