RNA id: XM_039800989.1


Basic Information

Item Value
RNA id XM_039800989.1
length 1887
RNA type mRNA
GC content 0.40
exon number 3
gene id LOC120559339
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9916527 ~ 9918632 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGGCAAAGTCACCAATTTCCCCTATATCCCCGGTTCGAGTCTGCGCAGTAGAGGCGGATTAGAGCAGGAATGACCTGTCGTTTCACTGAGATGTAGAGCAATTTTCAATCTTTGTTAAATTTCTCTTGCAGCACTTCCGCATAGAAAACCATGGCTGGTTCTCAAGAAGACCAGAAATTCTGCTTACAGGAGGTGCTCGATACTTTCAAGTTGTGTTTGTCGGAGAAAAAAGACGTCTATCTTGAACACTACGTCGCTGGGTGGCGAGGTCTTGTTAAGTTTCTGAACAGCTTGGGCAGTGTGTTTGGCTTCATTTCCAAGGATGCTGTCAACAAGATCAATATCCTGGTCACTTACCTGCACGGTGAGAACGGGTCTCAGTATGTCACTGTCCAGTCAATGGTGAAATATGAGCTGGACAATGAACTAGTGGACCTGACCAAGAGAGGCAGTCATCCAGAGTCCGGCTGCCGTACCTTGCTGAGGCTCCACCGGGCACTGAGGTGGCTGGAGCTCTTCCTGGAGCGCCTCCGCACCAGCAGCGAGGACAGCAAGACTTCGGTCATGTGTTCAGAGGCCTACAATGAGTCTCTCTCCCAGCACCACCCTTGGGTGGTCCGCAAAGCAGCGGGCATGGCCTTCTGCGTGCTCCCAGGGCGCCCCGCTTTCTTAGAAGTGATGAATGTGGGCCCCCCCGAGCAGGTGGTGGCCATGCTAGGGGAAGCTGTGCCTCTCATCTCTGAGGTGTACCAGATCACTGAAGAACTTTACGCTCAACAAAACCTGCTTGACTTACCATAGAGGGACACATTTGCTATTATATGCCACTTCATATGTTACACTATTAAATATGAAGGGCTGTCATGGTGGCTGCTACTCCTGTTTGGTGATTAAAGGGTTATTAATTAAGCAAAATTCCACTGACACTATCTAGTACAGTATTACAATTTTTCATATATATAAGTACTgttaattattatatatgtgtgtataatggactttgtttttattcaactttttcgAGATGTATTCATTTGGATTAAAGTAGATGAAGGGGAACAGTTGGGCCCAGAAGTCTTTGCTCACTGCCAGTAGCTGTTTGTTTAAATTATTactgcaactattttgacaatcGATTAATCATTCAAGTAATTtttcacaaacagaaacactaaATATTTGATGGTTTCAGGTTCTAGAATGTGCTGCTCTTCTTGGTCTTACGCCATAGtgaattgaatatttttttgttttttgacagATTTGGATATCAGCAAATTGATCATGAAAACAATTGTTAGTCACAGTTCTATTTAGAACTGTTCCCAATCATGATTGTATGCATTACAGAAATGCTTGTATGAAATAATAGTGTAATAATAGGGCCATTAGGTTAAATCTTTGATGTTCTCATACTATATTTCATTCAAGTATTGACAGATTTATCTAATACTAGATTATCTGATATTGGATGATACCAGATATTGCATAAATTACCTTaatcttgtaaaaaaaaaaattaatacagATAGAAGACCACCAGCAATCTGCAGCCAGAGTAGCAGTTTCCAAACCAATTATTTAGTTAGCAGAAAGGTCTAAACATGGCAACAGTATGACATTCATCGTAAAGATTCAAAACAAGGCTAACATTACGAGACAGATGGTGGTGGAACAATGTGGAtgcttaaatttaaaaaaaatatataacaaatgGCAAAACATCTTACCAATAAATCAAACAGAATTTATAAACTGTAGCTTTAAGAAAAGAAATGTCACTTGGTTGATGATTGTGAATATTTGTGTTATGTTAGAGTTGAGGATTGATTATTGATTACCTGTTGTCTTAAGTAAAGTAAATGAGGACATACTGTAGGTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU64628 lncRNA upstream 112181 9803739 ~ 9804346 (+) True G48415
TU64613 lncRNA upstream 150132 9764056 ~ 9766395 (+) True G48400
TU64612 lncRNA upstream 163982 9752026 ~ 9752545 (+) True G48399
TU64611 lncRNA upstream 164879 9751330 ~ 9751648 (+) True G48398
TU64610 lncRNA upstream 185960 9727828 ~ 9730567 (+) True G48397
TU64731 lncRNA downstream 1416 9920048 ~ 9920808 (+) True G48481
TU64733 lncRNA downstream 6068 9924700 ~ 9925070 (+) False ubxn10
TU64760 lncRNA downstream 92204 10010836 ~ 10014383 (+) True G48507
TU64776 lncRNA downstream 231248 10149880 ~ 10151197 (+) False agmat
TU64888 lncRNA downstream 485420 10404052 ~ 10404759 (+) True G48594
XM_039800988.1 mRNA upstream 12084 9901990 ~ 9904443 (+) True LOC120559338
XM_039800365.1 mRNA upstream 154603 9754069 ~ 9761924 (+) True sdf4
XM_039799983.1 mRNA upstream 227197 9597626 ~ 9689330 (+) True syt6a
XM_039799973.1 mRNA upstream 372290 9535470 ~ 9544237 (+) True zbtb48
XM_039801490.1 mRNA downstream 3968 9922600 ~ 9925081 (+) True ubxn10
XM_039801491.1 mRNA downstream 17917 9936549 ~ 9969923 (+) True vwa5b1
XM_039799236.1 mRNA downstream 77656 9996288 ~ 9999314 (+) True fam43b
XM_039800012.1 mRNA downstream 104708 10023340 ~ 10116835 (+) False LOC120558778
XM_039800009.1 mRNA downstream 110900 10029532 ~ 10116835 (+) False LOC120558778
TU64544 other upstream 486580 9404224 ~ 9429947 (+) True G48347
XR_005639234.1 other upstream 798326 8990487 ~ 9118201 (+) False LOC120559255
TU64306 other upstream 1189975 8716767 ~ 8726552 (+) True G48162
TU64206 other upstream 1228563 8681925 ~ 8687964 (+) True G48077
TU64964 other downstream 695399 10614031 ~ 10703381 (+) False G48640
TU65107 other downstream 1253963 11172595 ~ 11173654 (+) True G48752
TU65120 other downstream 1396030 11314662 ~ 11315992 (+) True G48765
TU65506 other downstream 2174147 12092779 ~ 12096837 (+) False LOC120559364
XR_005639365.1 other downstream 2263577 12182209 ~ 12210409 (+) False nol4la

Expression Profile