RNA id: XM_039801021.1


Basic Information

Item Value
RNA id XM_039801021.1
length 4777
RNA type mRNA
GC content 0.49
exon number 22
gene id scube3
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14325802 ~ 14402540 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGTCCGGAGCGCAGCGCAGCGCAGCGGACGCTTCGTCTTCTCTCCTCCCCCTTTAGACCCCGCCGCTCCGCTCcatctctccgtctctcttttcctctctctctctctcgctctctctctctctctgtctctctctctccctttcttaaATTGACATTGGTCTGGCTCGAAACATGATAACAGAAAAGACTTCCTCCGCTCCGCGTTGTCGGACTGTCCTCAACCCCGATCACTTGAAACTCAAATAAGCAGGCGTGAAGAGGAAAAAGGGATCGCACAGTATCCTATCAGCAGCTGCTCAGAGGGAATAACAAGATACCTTtataccacacacacgcacacacacacgcacacacacacacacacacacacacacatacacacagacacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactcggatGTGCTCTTGCGCATCGTAGATCTTAGAAAGTGCTCGTGTTGAACTATAGTGAAAGTAACATGTATATGCACGCTTTGATACGCGCAAGCCTTGGATTTGTAGGTTTCTGCTTGGTCGCCTTTGTCCAACAGTCAGCTTCAGGAAGTAAGACCACTCAAGATGTGGACGAGTGTGCAGAGGCGCTTGACAACTGCAGCATCGATGCCATCTGCCAGAACACCCTGAAGTCATACAAATGTATCTGCAAGTCAGGCTATAAAGGGGATGGCAAACATTGTGAAGATGTTGACGAGTGTGCAACTGAATACAACGGTGGCTGCGTCCATGAGTGCATCAACATCCCAGGAAATTACAGGTGCACATGCTATGATGGCTTCCGCTTGGCACATGATGGGCACAATTGTCTAGATGTGGATGAGTGCTCAGAAGGCAACGGCGGATGTCAGCAGATTTGTGTCAACATGATGGGCAGCTATGAGTGCCGCTGCAGAGAAGGATTCCTCCTGAGTGACAACCAGCATACCTGTATCCAAAGACCTAAAGTGCAATCGGAAGGCTCAAAGGAAGGACCCACCTGCATGGACAAGAATCACGGCTGTGCACACATCTGTAGGGAAGCACAGAAGGGTGGCATCTCCTGTGAGTGTCGACCTGGATTCCAGCTCATGGATAACAAGGACTGCAAACTGACGTGTAACTACGGTAATGGGGGTTGCCAGCACATCTGCGAGGAGACAGACCACGGCCCCAAGTGTTCGTGCCACATGAAGTTCGTCCTGCACAGCGATGGAAAGACTTGTGTAGAGACCTGTGCAGTGAACAATGGCGGCTGTGATAGCACATGTCATGATTCAGTGACAGGAGTCCGCTGCAGCTGTCCTGTTGGCTTCACTCTGCAGCCAGACCGCAAGACCTGCAAAGACATTGATGAGTGCCGTCTTAACAATGGGGGGTGTGACCATGTGTGTCGAAACACAGTGGGAAGCTTTGAGTGCAGCTGCAAGAAAGGCTACAAGCTGCTGACCAATGAGAGAACTTGTCAAGATATTGATGAGTGCTCTTTTGACCGCGCCTGTGACCACTTCTGTATCAACTCTGCCGGGAGTTTCCAGTGCCTCTGTCATAAAGGCTACATCCTCTACGGCCTGGCACACTGTGGAGATATTGATGAATGCAGTATAAACCGCGGAGGTTGTAAATACGGCTGCATCAACCGTCCAGGGAGCTACGAGTGTACCTGTCCACCCGGGTACAAGCTCCACTGGAACAGGAAAGACTGTGTTGagCTGGTGAAATGTCCTCTTGGACTGATGGCACCAAAGGCTACTCTGGCCTGTAGCAAGACGGGCAAAAAAGAGAGCTGCTCTCTTACCTGTGCCTCTAAGGCTCACTATCTGGCAGAGTCTGACAACAGCTACTCAGTCAGTTGTGGTATCCCCGTCCTCAGAGGGAAGTCCCCTGCGAGGCTCAActccagcagcagtcagagcTGCATAGAGACTTTGGCCCCTCCAGTGAAGCAGACGGCTTCTTTCAAGATTAAAAACGCCAAATGTCACCTGCATCCGAGGCTGACCGGCAGGACGGAGGACAGAGGACGGACACTTGGACCAGGAGGGGGGCAGCCCTGCAGCAACTGCTTGGTGACATTTGTCAACCTCAAATGCGACTCCTCTAAGAAAGCTAAAGGTCGACGTGCTCGCAACCCCTCTAACAAGGAGGTAACACGCATTACTTTGGAGCTGGAAGCTGAGGTCAAACCTGGAGACACTACGGGGAGTTGCAATCTCAGCTGCCTGAGGCAGCGTATGGAGAAACAGGTTAAGACGTATATCAAGGCTCTGAAGAAGTCCATCAACCAGGAGCGCTTCCTGATCCGAGTTGCTGGTTTGGAATACGAGGTGGCCCAGAAACTTCCCCAGGCTGCTCCGAGTCAGGAGAACTGCGGGCCGGGCTGGGAGAGGGATAGTGGCCGATGTGTCAGATGCTTGTCGGGGTCTTACTACCATGGTGAGCAGGAGCGCTGCGTCCAGTGTCCACCCGGCACTTTTCAGGAAAAGGAGGGGCAGCTTGCCTGTGACCTCTGCCCCGGCAGTGACGGCCACGGGCCTGTCGGGGCACGGAACATCTCCTCTTGTGCAGGCCAGTGTCCAACGGGGTCCTTCTCCAGTGATGGTTTCAAACCGTGTCAGGCGTGCCCTCATGGCTCCTACCAACCAGATTTGGGACGGACCCTGTGCTTCCCCTGTGGGGGAGGACTGGGCACCAAACGGGAAGGTGCCAGCTCCTTCCATGATTGTGAAGTTAAAGTCCAGTGTTCTCCAGGTCATTACTACAACACCACAGTACACCGGTGTATCCGCTGCCCAGTGGGGACGTATCAGACAGAGTTCAGACAGAACTACTGCATTTCCTGCCCTGGGAACACCACCACTGATTTTGATGGTGCCACAAGTGTTTCGCAGTGCAAGAACAGGCAATGTGGTGGCGAGATGGGCGAATTCATGGGTTACATTGAGTCGCCCAACTATCCCGGTAATTACCCTGCTAATGTGGAGTGTATTTGGAACATCAACCCGCCCAGCAAGCGCAAGATCCTAATTGTGGTGCCGGAGATTTTCCTGCCCTCGGAGGACGAGTGTGGAGATGTGCTGGTTATGAGGAAGAACTGGTCAGCTACATCCATCACCACCTACGAGACATGTCAGACGTACGAGCGGCCCATTGCCTTCACAGCTCGCTCCAGACGTCTCTGGATTAACTTCAAGTCCAACGAGGCCAACAGCGCCAGAGGCTTTCAGATCCCCTATGTTACTTATGATGAGGACTATGAACAGCTCGTAGAGGACATAGTGCGAGATGGAAGACTCTATGCCTCAGAAAACCATCAAGAAATCCTCAAGGATAAAAAACTGATTAAGACTCTTTTTGACGTGCTGGCTCACCCAAACAACTACTTTAAGTACACCACTCGGGAGTCCAACGAGATGCTTCCCCGCTCCTTCATACGCCTCATAAGCAGCAAAGTCTCAGCTTTTCTGCGACCATACAAGTAAAGCTCACACAGCCGCCGAAGTACCAGATCGTGATCTCCGACATCCCCCCCCTTCACCTTACAGGCCACATCCCGCAACTCTCACAGGACTTAAAACATACTAGTGTGTTTACCTTCTTATTTTCCATAGGCTTTAATAAACACAATGCAGACCTGAGGAATACTGAAAGtttgtgttttagttttttttgtcagtttccATTTAGCACAGGCTTGTAATCCCGAGCTCAAGCATTTAGCAGGGATGTAGAATATGTGAGTGGGTTTGGTTTCCGTTGTGTAATGAAACCACCAAAAATAGAAACGCAAATTTCAGACAGTAGGAGTGGCATGTGTGCGCGGTTAGAGCTTGTTATTGTTTTTGCTTAAATGAGCAGTCAGTTTTCAACTCCTACAATTAAGTATGACTAAGTGTTGTGTAACCCTAGTTCCATCTTCAGTGTCTGTGCTGTCCTCAAGGAGAAGCGGTTAAAATTCATATCACAGCTGCATTTCAGGTCATTCAAAGCTTTACTTCATTTGAGCTCTTAGAGCAGTTTCCAATGGTTTTACTGTTAAAACAGTTAATCTGTTTTGTTACGCCTCTCTAAACTGTAGCAGTGTTTTCCAACCTTCAGAATTTCTGTAACATTGATTTCCAACcttcagatcattttttttttaaagtcaactTAAAGCAAATACAAACAGGTCGTTACCATTCCAGGAACATAGTGGACATTTGGGAGATTAATAATTTGAGAGAGCCACAGAAATAAGAATGTGATGTCTAGTGGAACATGTCTCCGAGAGAGAGGAATGTCTTTGAAGGACATTGTTTGCTGCTTCTTTTAAAAGGTCACTTTAATTCTTCAATCTTCATGTTGTCTTGCTGATGTACTCCACACACCAATAGTCTCTAGGTTAAAAACAAGGAAGCTCCACAGCTACAATAGTTTAGATCTTACATACAGGCAATGTGACATTATCAACTTACTGTATGTGGACTAccagttgtgtttttatttcaatcTTGTAAATAATGAAAATTAGACGAGGGTTGAATTCTTTAATCCTAAATTTCTCAAGCAGGCTCCCTAAAAATCACTTTCCGCCCCACCCGTCTCAAATCCAAAGACACCAAGTACCCCCTTTcaacacccctcacattttgtTCTGTCCCAATAATGACCGCACTTCCAAAGACTGCCATAAAAAAGGCCGGGTCACTGTTTTGTGCAGCCTATCCTTTTAGTACAAGTGCAatgaatggaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66341 lncRNA upstream 95409 14229645 ~ 14230394 (+) True G49665
TU66333 lncRNA upstream 96711 14228370 ~ 14229092 (+) True G49660
TU66338 lncRNA upstream 97957 14226682 ~ 14227846 (+) False uhrf1bp1
TU66339 lncRNA upstream 102080 14223295 ~ 14223723 (+) True G49663
TU66277 lncRNA upstream 201267 14123652 ~ 14124536 (+) True G49619
TU66419 lncRNA downstream 166 14402706 ~ 14403546 (+) True G49718
TU66418 lncRNA downstream 1355 14403895 ~ 14409162 (+) True G49717
TU66422 lncRNA downstream 8827 14411367 ~ 14417663 (+) True G49720
TU66488 lncRNA downstream 116234 14518774 ~ 14525189 (+) True G49743
TU66507 lncRNA downstream 142855 14545395 ~ 14546722 (+) True G49761
XM_039801715.1 mRNA upstream 8017 14307962 ~ 14317786 (+) False LOC120559736
XM_039801713.1 mRNA upstream 8017 14307966 ~ 14317786 (+) True LOC120559736
XM_039800132.1 mRNA upstream 22944 14231141 ~ 14302859 (+) False LOC120558842
XM_039800139.1 mRNA downstream 128614 14531154 ~ 14539601 (+) True pcbp2
XM_039800140.1 mRNA downstream 128614 14531154 ~ 14539601 (+) False pcbp2
XM_039800138.1 mRNA downstream 149693 14552233 ~ 14561394 (+) False aaas
XM_039800137.1 mRNA downstream 149694 14552234 ~ 14561394 (+) True aaas
XM_039800747.1 mRNA downstream 197737 14600277 ~ 14616442 (+) True LOC120559201
TU66274 other upstream 204781 14113050 ~ 14121022 (+) False hmga1a
TU66273 other upstream 204781 14113268 ~ 14121022 (+) False hmga1a
TU66275 other upstream 204781 14113268 ~ 14121022 (+) True hmga1a
TU66161 other upstream 790881 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 1441516 12860721 ~ 12884287 (+) False LOC120559134
TU66523 other downstream 162327 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 172002 14574542 ~ 14577572 (+) True G49776
XR_005639382.1 other downstream 449856 14852396 ~ 14852469 (+) True LOC120559927
XR_005639381.1 other downstream 451014 14853554 ~ 14853627 (+) True LOC120559926
unassigned_transcript_225 other downstream 610355 15012895 ~ 15012967 (+) True trnak-cuu

Expression Profile