RNA id: XM_039801051.1


Basic Information

Item Value
RNA id XM_039801051.1
length 2606
RNA type mRNA
GC content 0.46
exon number 17
gene id lmbr1l
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21295147 ~ 21308168 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcaggCTAGCTCAGTTGATTAAATGCAGACGGGCTAGACAGCCACACATCCACTGCATTACTTACAAGATGCCCcgtgttttaactttttaaccaTCGCTTTTAAGCCTGAGGATACTGTTATGGTTTCGGAGAATGGAAACGGACGACGTGTCGGTTAGAGAGCAACTTTTCCACAACCGTGTCCGGGAGACCATAATCTGTGTACTCCTGTTTACATGCCTTTACATGGTGTCCTACCTCATACTTACCCATTTCAAGAAGACTGCTGAGTTTGTCACAGATGATATTGAAGATGCCACCGTCAACAAAATTGCGCTGTGGCTGTGTACGTTCACCCTGTCTGTTGCAGTGTGTGCCGTGCTCCTTCTCCCCATCTCTATTCTGTCCAACGAGGTGCTGCTCACCTTCCCCCAGAGCTACTACATGCAGTGGCTCAATGGATCTCTTATCCACGGATTGTGGAACCTAGTTTTCCTTTTCTCCAATTTGTCCCTGGTCTTCCTCATGCCCTTTGCCTACTTCTTCACGGAGTCTGAGGGATTTGCGGGGTCCAGAAAGGGGGTTATGGCACGAGTGTATGAAGCAgttgtgctgctgttgctgctggctCTGCTTGTGCTGGGCATTGTGTGGGTGGCATCAGCCCTCCTCCACGACAACATAGCCAGGAAGAGCCTCTATGACCTATGGGAGTATTACCTTCCATACCTGTATTCGGGCATCTCTCTGTTTGGAGTGTTGCTGCTTTTGTTGTGCACTCCCTTTGGGTTGTCTCGAATGTTCAGTGTAACTGGCAGCCTAATGGTCAAACCGCGGctgttggaAGATGTCGAAGATATTCTGAGCTGCACCACATTTGAGGAAGACTCACTCTCCAGGAAACTGAACTGTGGCAGTACAACGTCATGCTGGGTCAAGCTGAACATGGAGGGGATGAAAAAAGAGTACCAAACAGTCCGGAGCAAGCGCATTGCCCTAGAAATGCGTAGGAAAGCGTCCCCATGGCAGCGAAATTTGGGCTATCCACTGGCCATGCTTGTGCTCCTCGCACTGACGGTGATGTGTGTACTGATGGTCTGTTTCAATGTGTTGGAGTTGCTCCTGGATGAGACTGCTATGCCCAGAGGAATGGAGgaCCCTCATCTGGGGATGGCCTCCTTCTCCATGTTTGGCTCACTGGGTGCTGCAGTTCAAGTAGTCCTCATCCTCTATCTGATGGTGTCCTCAGTGGTGGGCTTCTATAGTTCTCCTCTCTTCACTGGCCTCCTGCCTCATGCACAGGACACCAACCTCACACAGataatTGCTAACTGTGTTTCATTGCTTATCCTGAGCTCAGCACTGCCAGTCTTTTCACGCACAATTGGGATCACCCGCTTCGATCTACTGGGAGACTTTGGTCGGTATAACTGGCTTGGGAACTTCTACATTGTATTCCTGTACAACATGCTGTTTGCTGGTCTCACCTCTGCCTCCCTGATCAAGACGGTCACCTGGGCAGTACAGAGAGAGCTTATCCGTGCCTTTGgTCTCCACAGACTGCCTTTAACTGTGTCACGCTCCACTGTCCCCTTCAGACTCCTCCTGGCCAGTGGACTGTCTAAAATCCAGTGACTTTTCCTCATCGCTGCCTTTCCTAACCTTTTTAAAAACTGATCCCCTTCAAATGTCCATCTTGGATTAAAGGCCTTTGCCCATTGGTACATGGGTCAGGTTGCCCGATGGGAAGTGACCGGAGAAGGTGACGAGTCTGTCTGCACAGTGTCCAGGGGGAACTTTGCTTGAAGCTGTGTTTAATGACCAATATATCAGGGTCCAATTTTGTGCAGTTATTTGACTGCAAAGACAAGTAGTAAGTGATGTGAAAGTCAGCGGAGTCATTTTGAAATATTATATTGTAACTGTGATGTAATTTCCTCTTTCTGCTCCGGGTCGATCaagtgctctctctctttctctgtggcTTACCCACGCTTTCCCCTCTTTGGTTGTACCACTATTTTAAGATTGGGAATCTTACTTCCATGTGTTGGTGGTCCAGTCTGCACCAGTGTTATGTTAGTTGATGAGAGGAAGTTGTTTTTTggagcaaatatgacagagtACCTTCTCTATGGATCTACAGGTTACACAGGGAATATGCGAGTGAGGTAATGATGAGTTTACGGAGTTTACGGAGTCTGAGAATAACTCATTCCTACAAAAATACACTAAAAAGAAAGCTTTATACTTTGTTCAATGCCAGACTTTTGAATGAAGTGACACTCACTAGGAGAAACTTCTGCCTTTGACCAATCAAACTGTGAATTATTAAGAATTTATGTGGGGAAGTGCAATATTTTATAAGTACAGGCACACTATTTAACTTTACCAAAAGTAATTTCCAAAACTTCTGAATGCATAAGCTTAGAATAGTTTTggaatattttcaaaaaagcGAACATGACCATCAATCTATGCAATCATTAATGGTgtcagtttttatattttgtttatcaGCTGTATCTCATCATCTTTAATGTGTTGGTGACACTGTGTCACGGTTTGCCTTTGCTGCTGTATCAGCAGATTTATTAGCTGTTGGTTTGACCAGCAGGGGACAGT

Function

GO: NA

KEGG:

id description
K25215 LMBR1L; protein LMBR1L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69089 lncRNA upstream 6442 21277776 ~ 21288705 (+) True LOC120559383
XR_005639244.1 lncRNA upstream 6745 21277798 ~ 21288402 (+) False LOC120559383
XR_005639243.1 lncRNA upstream 6745 21277816 ~ 21288402 (+) False LOC120559383
XR_005639242.1 lncRNA upstream 6745 21284006 ~ 21288402 (+) False LOC120559383
TU69050 lncRNA upstream 61618 21230270 ~ 21233529 (+) True G51685
TU69118 lncRNA downstream 56439 21364607 ~ 21365558 (+) True G51735
TU69119 lncRNA downstream 57453 21365621 ~ 21366055 (+) True G51736
TU69120 lncRNA downstream 58133 21366301 ~ 21366577 (+) True G51737
TU69121 lncRNA downstream 58508 21366676 ~ 21367030 (+) True G51738
TU69122 lncRNA downstream 67863 21376031 ~ 21376263 (+) True G51739
XM_039801064.1 mRNA upstream 26901 21263048 ~ 21268246 (+) True wnt1
XM_039801494.1 mRNA upstream 128730 21071707 ~ 21166417 (+) True lrp1ab
XM_039801495.1 mRNA upstream 128730 21071707 ~ 21166417 (+) False lrp1ab
XM_039800106.1 mRNA upstream 249179 21032895 ~ 21045968 (+) True si:dkey-21c19.3
XM_039800108.1 mRNA upstream 263952 21025140 ~ 21031195 (+) True LOC120558837
XM_039801053.1 mRNA downstream 4384 21312552 ~ 21317922 (+) True dhh
XM_039801052.1 mRNA downstream 4384 21312552 ~ 21317922 (+) False dhh
XM_039799357.1 mRNA downstream 15146 21323314 ~ 21359987 (+) True kmt2d
XM_039801028.1 mRNA downstream 108968 21417136 ~ 21473374 (+) False arhgef25a
XM_039801029.1 mRNA downstream 108968 21417136 ~ 21473374 (+) False arhgef25a
TU69094 other upstream 4185 21289588 ~ 21290962 (+) True G51716
TU68644 other upstream 762685 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 969906 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 973565 20321511 ~ 20321582 (+) True trnah-gug_9
TU68517 other upstream 1294709 19996511 ~ 20000438 (+) True zgc:194242
TU69116 other downstream 53122 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 53122 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 250722 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 475098 21783266 ~ 21788322 (+) False LOC120559721
TU69347 other downstream 595374 21903542 ~ 21904077 (+) True G51926

Expression Profile