RNA id: XM_039801052.1


Basic Information

Item Value
RNA id XM_039801052.1
length 2296
RNA type mRNA
GC content 0.47
exon number 4
gene id dhh
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21312552 ~ 21317922 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGACCCAATGGCTGGTGCAAGGTGGCCAGGAGCTCTGAAACGCGACAGAAGACGGTGGAcggaggagagaagaagaaaaaaaaatctcaggAGAGACATTTCTGGATGGACAAAGAGGATGAGAGCGCCACGGGAGCGTCCATAGGAATTGCAGGGAGCCGTGGGGCTTTTGGTGTGCGTCAGTTTGTGTCTCGTCAAAGGAACTGCatggagagagagcgagagcgagagagagagagagagagagagagagagagagagaagcgCTCTAACACCACATGATTTGGAATGGACCACGATTTGACCCTCATTCACATGCTATCATACACCTGGAACTGGGGTATCACTATAGGTACTGTGAGCCACTGACTCCCGGGAGCCCCAACCCTCCTCAATGAAGCAGTCCTGGTGGGCCCGCCTGGCACAGCTCGGCCTGCTTGCTGTGTGGACGTGCATATGGCTGGTCCAGGGATGTGGACCGGGCCCTGGGCACGGCATCCGCTCCAGGCCCAGGAAGCTCACAGCCATGCACTACAAGCAGTTTTTCCCCAACTTCTCAGAAAACAACCTTGGTGCCAGCGGGAGAGCAGAGGGCAAGATCACACGCAACTCTGAGCAGTTCAATGAACTTGTGTGCAACTACAACTCAGACATTGTCTTCAAGGATGAGGAGAACACCAACGCAGATCGCTTCATGACCAAGCGCTGTAAGGACTGTTTGAACAGGTTGGCTATCGCAGTGATGAACCAGTGGCCAGGGGTACACTTACGTGTGACAGAGGCCTGGGATGAGGACGGCCACCACCCTCCCGGCTCTCTGCACTACGAAGGCCGGGCCGTGGATATAACCACTGATGAtagagaaacagagaagtatGGTCTTCTAGCCCAGCTGGCTGTGGAGGCTGGCTTTGACTGGGTCCACTACGAGTCCAAATATCACATCCACTGCTCAGTAAAAGCTGATCACTCCGTTGCAGTGGAAAAAGGTGGCTGTTTCCCAGGCTGGGCCCGGGTGACTGTTGCTGGAGGGGGGCAGAAGAGCCTGTCATCTCTTGTTCCCGGGGACAGAGTCATGGCCCTGTCTGGGACAGGCCAAGTCGTGTTGAGTCAAGTCCTCTTGTTTCTGCACCAGGACCAAGAAAGCTGGTCTGCCTTTCTGTCTCTGGAGACAGAAGATGGCCAGAGATTGGCCCTTACCCCACATCACTTGGTCTTTTTAGCCCCACATTGCAGACTCGACAGCAGTGAGTATCAGGCTCAGTTTGCTAGCAGAGCCAAAACAGGAGACTGTGTTCTCATCCATACAGCAGAGGGTCTAGTACGTCCATCGCGAATCATCTCAGTTTCAGTAGAGGAGAGTGTGGGAGTCTATGCGCCCTTGACAGAAGCTGGAACTGTGTTTGTTGATGGAGTGCTGGCATCCAGCTATGCTCTGGTGGAGGACCACAGACTTGCACACTGGGCATTTGGACCTGTGCGACTCCTCTCCTCATTCAGACAGCTACTTTGGGGGGACTGGGAGACAACAAAAGAACAGCAGAACACAGACAGTGAAACAGCTTGCACTAAGAGTCCATTTCATTGTAGCACTTTGGCCGCAAAGGACAAAGCAGGTTTATATGTGAAAAATGGCACTCTGAACAAACAAGACAATCTAAGTGAACCTCTTAGGACGGAAATTAAAGAGAAGCAGACATCAGATGTGCATTGGTATGCTCGATTACTGTACAGTTTTGGATGTATCTTTTTAGACTCCAACTCATTTCATCCTTGAAAGCCTAAAACTTTAGAGTCCGTACGTTTCGCCTTGTTCGATGTTACAACGTTGATACATTTACACTAACACTTCCTGTTCATTTCTTCAAAAGAATTAAATTACTGGACTGCCTTGCCTTCTTTTTTCACCAGTGTTTGCATCATAATCTATCATAATGATATACATGCTTATACTTATGTGATATTTTGAAAGAGATTGAGTTTGATGAGACAAATGATCTGAGCAggttaatgtaaaaaaatggtCATGCCAAAATGACTGTATCATAGTCTATTTGTACATCatgttatttcttttaattatttcagttatgtgtgtaaaaaatacattattctAATGAGATAAGAATGAATTTTTCCCCACAACAATAGAAtctttatttttgtactttctcaatcataatatataaatgtttcattttattataataattccactacatatattgtatgtcCTCACAtgttgtaaaacaaattaaaatgtcattCTAGTAAGCAACACACTGCTTTTTCTTCA

Function

GO:

id name namespace
GO:0007267 cell-cell signaling biological_process
GO:0007275 multicellular organism development biological_process
GO:0016539 intein-mediated protein splicing biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005886 plasma membrane cellular_component
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69089 lncRNA upstream 23847 21277776 ~ 21288705 (+) True LOC120559383
XR_005639244.1 lncRNA upstream 24150 21277798 ~ 21288402 (+) False LOC120559383
XR_005639243.1 lncRNA upstream 24150 21277816 ~ 21288402 (+) False LOC120559383
XR_005639242.1 lncRNA upstream 24150 21284006 ~ 21288402 (+) False LOC120559383
TU69050 lncRNA upstream 79023 21230270 ~ 21233529 (+) True G51685
TU69118 lncRNA downstream 46685 21364607 ~ 21365558 (+) True G51735
TU69119 lncRNA downstream 47699 21365621 ~ 21366055 (+) True G51736
TU69120 lncRNA downstream 48379 21366301 ~ 21366577 (+) True G51737
TU69121 lncRNA downstream 48754 21366676 ~ 21367030 (+) True G51738
TU69122 lncRNA downstream 58109 21376031 ~ 21376263 (+) True G51739
XM_039801051.1 mRNA upstream 4384 21295147 ~ 21308168 (+) True lmbr1l
XM_039801064.1 mRNA upstream 44306 21263048 ~ 21268246 (+) True wnt1
XM_039801494.1 mRNA upstream 146135 21071707 ~ 21166417 (+) True lrp1ab
XM_039801495.1 mRNA upstream 146135 21071707 ~ 21166417 (+) False lrp1ab
XM_039800106.1 mRNA upstream 266584 21032895 ~ 21045968 (+) True si:dkey-21c19.3
XM_039799357.1 mRNA downstream 5392 21323314 ~ 21359987 (+) True kmt2d
XM_039801028.1 mRNA downstream 99214 21417136 ~ 21473374 (+) False arhgef25a
XM_039801029.1 mRNA downstream 99214 21417136 ~ 21473374 (+) False arhgef25a
XM_039801031.1 mRNA downstream 119560 21437482 ~ 21473374 (+) True arhgef25a
XM_039801608.1 mRNA downstream 180784 21498706 ~ 21504920 (+) True slc26a10
TU69094 other upstream 21590 21289588 ~ 21290962 (+) True G51716
TU68644 other upstream 780090 20446243 ~ 20532462 (+) False LOC120559772
unassigned_transcript_229 other upstream 987311 20325169 ~ 20325241 (+) True trnaf-gaa_3
unassigned_transcript_228 other upstream 990970 20321511 ~ 20321582 (+) True trnah-gug_9
TU68519 other upstream 1312114 19996511 ~ 20000438 (+) False zgc:194242
TU69116 other downstream 43368 21361290 ~ 21363640 (+) False G51734
TU69117 other downstream 43368 21361290 ~ 21364430 (+) True G51734
TU69195 other downstream 240968 21558890 ~ 21559349 (+) True G51804
TU69309 other downstream 465344 21783266 ~ 21788322 (+) False LOC120559721
TU69347 other downstream 585620 21903542 ~ 21904077 (+) True G51926

Expression Profile