RNA id: XM_039801138.1


Basic Information

Item Value
RNA id XM_039801138.1
length 5179
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC120559455
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17375003 ~ 17394723 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTAGACCTGTCTGGGAAGAGGACAGAGGCAGCAGGGGAGGGGTTGCTACAGAGCAGTGAACTATCTGTAGATTAAGTAAACCAGTGATTGATCTGTTCCCAGATCTACTTTCTAAATGCTAGATATGTGTTTGTGGCGTTGAGGGAAAGCGCATGTTTAATGGCATTTTGGAAGTCTCCGCGGCGCTCTCCGGGTAGAAGAGGAGGCATTACAGCGcgagttagctaacgttagctcgctaaCAAGCTGGCTGAAATGGCTGTCTAACAGGCTGCCAAAGATCTCTTCATGGATCACAGAGGACAACAAAGAGAAACCACTGCATCTGTGAGCATAGCCAATAATTAGGGAATCTGACCCACAAGCATATCATCAGACTGACGTCCATGCATGTGGCCTCTTAAGTTGTTTATAGACATCTGTTGGGCAGCCCTAAAGCCTATTGCTATGCACTATACACGGAAAGACATGAGCTGTGAGAATGCTGGGAGAAGCAGGCTTCTTTCTTGTAGAACTATCCCTCTAGTAATAGGGCTTCTGGTGACCATGGCCCAGGGCACTGTGCCAGAACAGCAAGAGACACTGGTGGAGATGATATCTGTGGAACTAGAGGCTTCTATGCAGTCATCTGTGCTCTCTGAGCTCCAAGCCGCAGCATCTTTAGTTGGCGAGGGGCCGCCTACAGCTATCCCAGATTCCTCTGCAAAGAATGGGGGAGTGCACACTGGCATTCCTGACTCCTCGGCAATCGTGGGCCAGGTGTTCCAGTTGAAGGTTCCCCCAGGACCTTCCAATGCAACCTGTAATGTCCATCTCACTGAGATGGGAAAGGAGACTTTACCCTCATGGCTATATTGGGACAAAGAGAGCTGCATTCTGAGAGGCTTGGCCCTGGAGAAGGATAAAGGTGTGTATCATATCTTGGTGTCTGGAGAGGAGATAATTGAGAAGACTGGCAGCCAAGTGTTCCCCAGTACGGTCTTCTCCATTGAAGTCTACCCAGAAGAACGGGCAGACACTGAGCCAGCCCTGCTCACTCTACAGTCTGATATCAGCGGCATCCAGCCTTTCACCTGTGGCTCTGAGGAGCTTGTAACTGTCCTCACTGTCATCTTGGATGCTGACTTGACAAAGATGGTTGCTGAACAGAGGGTCAACTTACTGGGCATTATGAGAAAATTCTCTCATGTGCCCCTAGAGCACATGAGGGTTGTCCCTGTTGTCAACAATCGCTTATTTGACATGTCTGCTTTCATGGCTGGACCAGGGAATGCCAAGAAGGTGGTGGAGAATGGGGCCCTACTGTCATGGAAACTTGGATGTGCCCTTGACCAGGGCAGTATTCCTGATATTAACAGCGTCCATTCCTCAGCAAAGGATGGGACCATGTCAGCCAGGCTGGGATACCCAGTGGTTGGCTGGCACATTGTCAACAAAAAGCCCCATGGAGTGAAACGGGTCAGACGGCAGTTGTACAATACTCCTACTCCAGTGCCATCCCTGCTTCCTCCGACTACTCATCCAGAGCCCCCTCTACGGGTTGTTCCCACCCCAACCTCGCCTTCTATTGCCCCAGCAACAGACAACTCTGCTCCCCCTGTCCGAGGCCCTTTGCCTCTTCCAGTGAAGCCCACTATGAAGGTCAGAGATCAGATAGCCCACACACCTGTTTTTGGACCTCCCCAACCCACAAGAGTACTAGGAACTACAAGCACCATCCCTATTCAGCCTACCATGACCCGGCCTACATTTGTGGAGGCCACTGCTCTGCCAACACCACCAAGCACCACCAAAAGACCCAAACCCTCTACCACAAGGAAACCCAAGAAACCCAAAACCTCCACCCCAGCTCCCAGGGAACCCAAGTCCACCACTACGAAACCACCCAAACGCACCACTCCTCTCTCTTTGGCTCCAGACTTGAATCAAAACCCAGAGATCCGCAACGCCATTGATCAGGTGAATGCATGGGTTGGCACATACTTCGAGGTTAAGATTCCTCCTGATACATTCTTTGACATGGAGGATGGTACTACTGATAAGCTGCGTTTGACTTTGAAAAGGACCCCCAAAGAAGCAGTGAGTGAAACATCCTGGATACAATTCAACAGCACAATCCAGCTCTTGTACGGCCTCCCAGAGGAGCAGCATGAGGGGAAACATGAGTACTTCATGTTGGCCACTGACAAAGGTGGGAAGAGCATCATGGATGCATTTGAGGTTCAAGTCAATCGTTGGTCTACTAATGACAAACCATCAGTTGTGTTTGCTGCTCGTTTCCATGGTGACCCCAAAACGTTAAGCAATGATGTCCATAAGAAGATTCTTTTGACCAAAAAGTTAGCTTATGCCCTTGGTGATCGCAACAGCAGCACAGTAACCCTGGGAAGCATCACTAGAGGCTCCATTGTGGTGGAATGGACGaacaacagtctgcagcagaGTCCTTGTCCAAAGGACCAGATCACAGTTCTCAGCAACAGGATCTCTGATCCCCAAGGGACACCTAAATTGGCCTTCATCAAAGCTATGGAGCCTGAATTCAAACCCATAAACATCTCCATTCGTGGCACCAATAAATGTCAGAGCTACACATTCGTCCCACCAGGAGAGGTGCCTATGCCTGTTCTTCCTACAGCTACACCTTCACCTGGGACGGGTCGTAGGAGCAGTGACGATGTTTACCTACACACTGTCATTCCCGCTGTAGTGGTAGCTGCCCTGCTGCTCATAGCTGGGATCATTGCCATGGTCTGCTACCGCAAGAAGCGCAGAGGGAAGATGACCATAGAGGAGCAGGCCACTTTCATCAAGAAAGGTGTTCCCATAATATTTGCAGATGAGTTGGATGATTCCAAGTCGCCACCGTCCTCCAGCATCCCTCTTATCCTTCAGGAGGAAAAGCCCCCACTTCCTCCTCCAGAGTACCCTAACATGGCTGGCCCCCACAGTACCCTGCTTAACCAGGATCTACTGGAGGAGTATTCCATCTATCAAGATGATGATCCTAATGCACCTCCTTACCAACCCCCACCACCATTTACTGTCCCCATAGAGGGCAAAGGCTCTCGCCCCAAGAACATGACCTCATACAGGTCCCCACCTCCCTATGTGCCTCCCTAACGCATGCTAGAGCTTTCAGTTCGGAAAGCAGGTGCAATGTAGGGATGCTTGTTGAAAACTACTACAGGAGTAATTTTACATGTGTTTAATGAAATGGCTTTGACTTTGTAGAGGAACAGTCAACCATACCCACATATTTGACCATCATGGATAAGACACTGTATCGTACAATTCTACTACTGGCACAGGGCAAATGGATGGGGAACAGTTTATAATtccagcactttttttttttttttttttttgtccttcagATCTGCTTTTGACTTCTTGCATATTCTTTTTCGTCTGTTTTTTGCCAAGAAGAGTCAATTTTATCTTCAATGATGTACTATTTCTATTGTatagaaaataataaagaaGCCGGAGAGACTGAAGCCCACAGGGCCATTGAGCAGATGTCACCATGACAACTGACTTGAGGCTCTCCCTCACAATGTTAATCTTTATGAGTTATATCACTCTTATCTGTCCTTTGGCTAGGTTTACTAAGATTTTGCACCTGTTATTTCTAGAGGGGAATGAGATACAAGAAGCCAAACTGAAAGCATGaaaaactttatttacacaaaaaTCTGTTTGTTTCCTAGACTTTGATTCCTGTTTTTTCCTCTGCTTTGCTCCCTCTTGACAATAACATGCAAAACTTGCACTTATGCAACTTCTTGTTAAACCTTGCACTATGTGTCTTGCGCATAATTGAACGCAGGAAAGTGGTAGTCCAAtaaggaaaaaatattttctttttgtatccTTGAACTTACCACATGACTGAGATTTCTCTGGTACTTGATCACAAAGGACATCACACTGATCACGCCTGTTGTAGATGTAGCCTAATTAAGTTAGaaaacaaataattattttttcctcctttttgttaatgtgtgtgcCACTGAACCTGCCTGTGAGATGGTTGGTTTTGCTGTTGCCAAGGTGATGTCTGTGGTCACACAGAAAACCATGTCGGGTTGTTATAACAATAATGAAGGGGCCAATGGAATGCTGTGGTTCATAGCAGGGTGAGACTGGTGACATCGAGCTGCATCCACTGTCttatttcagtttgttttgttaGTATGAGCGGTGTGTGGGCTTAGAGTACTGTATTATCACTGCTCTGCCTCTAGGTGTTGCACTGTTATGTTAAGTGCACTGCCTGTTGTCAGGTCAGATGAGGCATGGGGACAAGGGGATGTACATAATTGTGTGCCTGTGAAATTAAACAACTCCATAATGTTAGTGTTTTATCAGTAAACCTAGTAGGGAAAGGGAGGGCTGGGGTgggaaataattttattttttaattgtagGTCTAGATTTATGATCACAAtcatggggggaaaaaatgactTCATAGTTTGTAAGGGTACAAATAATCGTTGACCTGCCCATCACAAAAAAGAATGCATTATATCAATATGATGGGGAACAAAGAAACTACAACAATATGTGAATTATGTACATTTCATATCTGATATCACCATAAGAAAAAATGGTTAAAAATCTAATGTTTTTACTGAGTTTTTGATACAGTCTTAAACTTGTTTTatgaaaatatattaataaaatgtaatactatTTGTAAAGCCTCAAAGATGGTGTAtagtcactttttttatttggactggattaaacattttcaatatatatgtatgtgcagaTGTGTATTGAAGGGCTGACGAACACAATTCAAAGAAATTAGAATGCAATATACGTTAAATTCAAAATGTGATACTataaaatacatgttatatTTACATGGTCAAAATCAGTAATGGGCTTTGTTACAAGTGGGAGAATTAAGTGCAAACTATGAGATATGTTAGGGTTAGCATTTTTAAGTTAAATAAGTAGGTTTGAAATAACACACCCCACTTTGAATTCCAAATTTATTTTGTCATCAAATATGATTCCTGTGGTCATTCGTAGCCTTGCTTTACAGTATGTTGTCACATTCTTGTTCATAGAGGCTACGATAGGGTCCAATGGTTAGCTGGTTTTGGCTATAACATGAGCTTTACACTTGTTATAATAAACCAAATACACAGCA

Function

GO:

id name namespace
GO:0007016 obsolete cytoskeletal anchoring at plasma membrane biological_process
GO:0016010 dystrophin-associated glycoprotein complex cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67540 lncRNA upstream 211338 17163179 ~ 17163665 (+) True G50518
TU67530 lncRNA upstream 223090 17151182 ~ 17151913 (+) True G50509
TU67525 lncRNA upstream 239513 17134688 ~ 17135490 (+) True G50505
TU67495 lncRNA upstream 270039 17098622 ~ 17104964 (+) True G50493
TU67374 lncRNA upstream 545123 16826880 ~ 16829880 (+) True G50410
TU67785 lncRNA downstream 274115 17668838 ~ 17670631 (+) True G50700
TU67813 lncRNA downstream 355562 17750285 ~ 17776236 (+) True G50725
TU67815 lncRNA downstream 381679 17776402 ~ 17835766 (+) True G50727
TU67848 lncRNA downstream 548989 17943712 ~ 17944815 (+) True G50752
TU67849 lncRNA downstream 562475 17957198 ~ 17957644 (+) True G50753
XM_039801324.1 mRNA upstream 51973 17272953 ~ 17323030 (+) False LOC120559551
XM_039801322.1 mRNA upstream 51973 17272954 ~ 17323030 (+) True LOC120559551
XM_039801323.1 mRNA upstream 51973 17272954 ~ 17323030 (+) False LOC120559551
XM_039801326.1 mRNA upstream 51973 17272954 ~ 17323030 (+) False LOC120559551
XM_039801327.1 mRNA upstream 51973 17273603 ~ 17323030 (+) False LOC120559551
XM_039800746.1 mRNA downstream 116949 17511672 ~ 17518414 (+) True LOC120559200
XM_039799569.1 mRNA downstream 177056 17571779 ~ 17575143 (+) True LOC120558532
XM_039799568.1 mRNA downstream 177881 17572604 ~ 17575143 (+) False LOC120558532
XM_039801599.1 mRNA downstream 181999 17576722 ~ 17587580 (+) True slc17a9b
XM_039799338.1 mRNA downstream 291424 17686147 ~ 17689867 (+) False birc7
TU67547 other upstream 177830 17185911 ~ 17197173 (+) True G50523
XR_005639235.1 other upstream 380302 16977898 ~ 16994701 (+) True eif2d
TU67161 other upstream 969398 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 980771 16380044 ~ 16394232 (+) False brpf1
TU67110 other upstream 997514 16375308 ~ 16377489 (+) False LOC120559119
TU67812 other downstream 346737 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 1287420 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 1334757 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68363 other downstream 2061768 19456491 ~ 19462114 (+) False LOC120558947
TU68439 other downstream 2372929 19767652 ~ 19768564 (+) False LOC120558920

Expression Profile