RNA id: XM_039801158.1


Basic Information

Item Value
RNA id XM_039801158.1
length 4550
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC120559459
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15012216 ~ 15032560 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGCCATTCTTCAAACAACAAAgTCTGGCTGAGGAGGAGATAAAGACAGAGTCTGATGTGGTAGAGGGGATGAATGCATCTGCACGATCCAAAGTCCCTGATCCACCGGGGTCAGTGGAACGACCAGTGGCACCACAGAAGAGAAAGGTGTCCAGTCCCACCCATTCTTCCAATGGACACTCTCCCTCGGACACCTCCCCGAGCCCTctcaagaaaaagaagaagcctGGGGCCGTCAACTGTCACAAAGACCAGTCAGAGCTAAGACATGGTCCCTTTTACTATATGAAGCAGCCAGCACTCACCACAGACCCTGTTGATGTTGTACCGCAGGACGGCAGGAATGACTTCTACTGCTGGCTGTGCCACCGCGAGGGCCAGGTGCTCTGCTGTGAGCTCTGCCCCAGGGTGTACCACGCCAAGTGCCTCAAACTACCAGCTGAGCCCGAGGGCGACTGGTTCTGTCCAGAGTGTGAGGTATCTCGCAGAagacgtAAAATAACAGTTGCTGAATGCATTGAAACCCAGAGCAAGGCAATGACAATGCTGACAATAGACCAACTCTCCTACTTGCTCAAATTTGCACTCCAAAAGATTAAACAGCCTGGGACTGAGCCTTTCCAGAAACCTGTGTCTCTGGAACAGCACCCGGATTATGCAGAGTATATATTCCACCCCATGGACCTGTGTACTTTAGAGAagactatcaaaaagaaaatgtatggctGCACTGAAGCCTTTCTTGCTGACATGAAATGGATCTTACACAACTGCATCATCTATAATGGAGGTAATCACAAATTAACAGCAACTGCAAAAGTCATCGTCAAGATTTGTGAACATGAGATGAACGAGATTGAGGTGTGTCCAGAGTGCTATCTGTCTTCATGCCAAAAAAGGGACAACTGGTTTTGTGAGCCATGTAGTCAACCACACCCCCTGGTCTGGGCTAAGCTAAAGGGCTTTCCCTTCTGGCCAGCAAAAGCACTTCGGGAAAAGGACGGGCAGGTAGACGCACGCTTCTTTGGGCAACATGACAGGGCCTGGGTACCCATAAACAACTGCTACCTCATGTCCAAAGAGATCCCTTTCTCTGTTAAGAAGACAAAGAGCATTTTCAACAGTGCCATGCAAGAGATGGAAGTATATGTGGAAAACATTCGCAAGAAATTTGGGGTCTTCAACTATGCACCCTTCCGCACTCCCTACACACCCAACAACCAGCTACAGATGCTACTGGACCCCGCCAACCCCAGTGCTGGGACagtgaaaacagagaaaacGGATAAACTTCGCTTCAACTTTGATATAACCGCATCTCCTAAGATGGTCCTCAGCAAGAGTTCCACACCCAGCGGCATGAGTCGGAGGGTCTCAATGACAGACATGCCTCGGTCTCCAATGAGCACTAACTCCTCAGTTCACACAGGGTCCGATGGGGAGCAGGATATGGAAAAGGCCGGCAGGAATCCTGCCTTCCACTACAGCACTGGAGAGGAATCAATGGACTGTACTGCATCTCCTGTCTCTGGGAAGATGGGTCCCGCAGGTAGTATGGCAGGCAGCCCGAAACCCTTTAGCCCTAGTCTGGTGCCCAAGCAGGAGAGGACTGCAGGCACTGGCGGCATACTCAATCTCAACCTGGATCGGGTGAAGGCTGAGATGGATCTGAAGGAGCTGAGTGAGACcgtgcaacaacaacagcagcaacagcagcaacaacaaggAGCGTCGGCTCCCCTCCCCACCACAAAGAGACCCATCAGGAGTCTGGACAAGACTATTGAGAGCTGCAAAGCACAGCTTGGAATAGATGAGATCTCTGAAGATGTGTATAAAGGAGTGGATCACAGCGACTCTGAGGACTCTGAGAAATCTGACTCAAGTGACAGCGAGTATCTCAGCGACGAGGAACACAAGCCAAAGAGCTCCGCCCAGGACGACAAGGAaaaagcagagagaaaaaggcCCAAAGCAAGCGCGGAGGAAGAGAATAAGGAGGGAGTTACAGGGACAGCTGATAAAGCCAACCCTGAACCCCTGCTCAAAGACAAGCAGGGTAGCATTGGCCCAGATAGGGACCTCCAGGACAAGCCCAGAATGCCCCAGTCTCAGCCTCTCGCTGACAACAAACCCAAAGCCCCAGAGGAGGGCAGAGCAGCTACTGCCACATCAGCAGCTGAGCAAGACTCTGATTCTGAAAGAGAGCTGGTGATTGACCTGGGAGATGAACATGGAGGCCGTGACTCAAAAAGAGCAAAAAGAGAGCCAGGGGCTTCTGCTGCCAAAACTCTCAAAGAGCCTAATGTTGCCAAGTTGGAAGgAAAACTGCCTTCATCTGCTGCAGCCGCACCATCACGAGAAGCCGCCTCTAACCGGAAAGACTCTCTGCAACCCACCATCACAGCAGCCCTCAACCTTGTCTCCACTGCAGCTTCTAGTCAGCCCAGTGCCACCACGGCTACCAGCGGTTCAACCAGTGCACCCTCTCCTACCTCCACCTCAGGTTCCACAACATCCCCAGTACCTGCAGCTGTAAAGAAACAGCGCCCTCTACTGCCTAAAGAGACAGCTCAGGCAGTGCAGCGGGCGGTTGTTTGGAATCCAACCAAATTCCAGACGTCCTCTCAGAAGTGGCATATGCAGAAGGTGCAGAGGCAGCAGCAGGAAGAGCAGTCAGCAGCGCAGACACCGGCCCAGAGTCCGGGGCAGACGCGCAGCCCACAGCAGCTGCAGTCACAACAGCAGAACTCCTCCTCAAGTACCCGCTATCAGACCAGACAGGCAGCCAAGGTGCAAAAAGACGTACCTCAGGGTACTTCCTCATCCACAGCTGCCCAGGTCACATCTGGCAGCTCCTCTTCTTTCATGTCAGGAGACTTGCAGATCCCTACAGGCTCAGCAGAGGTGGCTGCAGATATAGCCAAGTACACCAACAAAATTATGGACACAATTAAAGGGACAATGACTGAAATATACAATGATCTTTCCAAAAGCACATCAGGAAACACAATTGCAGAGATTCGACGGTTAAGGATAGAGATTGAGAAACTCCAGTGGCTGCATCAACAAGAGTTATCGGAGATGAAACACAATCTCGAACTGACGATGGCAGAGATGAGGCAGAGTCTGGAGCAGGAAAGAGAACGGTTGGTGGCTGAGGTGAAAAAGCAGATGGAGTTGGAAAAGCAGCAGGCAGTGGACGAGACCAAAAAGAAACAGTGGTGCGCTAACTGCAGGAAGGAAGCCATCTTCTACTGCTGCTGGAATACCAGTTACTGTGATTACCCCTGTCAGCAAGCCCACTGGCCAGAACACATGAAGTCCTGCACACAGTCAGcCACAGCTTCGCAGCAAGAGCCAGAAGCAGAGTCCAACTCTGACCCTTCATTGAAATCTTCAAGCCACTCTCCAGCCACACAGACCCTGCCCTCAGGAGCGGGATCCATATCAGACAAAAGCAACTCTCCCACATATTTGGACAAGAGCAAGGACAGTGCTGGAGTTACTGTGACCTAACTGCTACACTACAGATACTCTCGCACATTTTGCAAGGCCGCTGTGGGGCTTGTCGTGTCAGACATGATGCGGCTTCAAACTTGGTGCTTAAAGGCCTGCGTGACAAATCACTTTGATTTTTCCATTCCCACGTGTACATCTGCTTGgtggactttttttttgggTTCATCTCTCATTCGCAGTTATCACAAGTCTGTGTTCAGGTGGATTCACCATGTGAAAGTAGTCTGTCTTGAGAAATAAATGTGAGGTTGTATGTTTTCATACTGTAGTTTTGTTAGAGCTTTGTTACCACTTTGTTTCAAGTCTGAACAAGATTGTATCAACCCACAGAATATTTACACTTTTTCAATGCTGCTCTTAagtactttgtttttattttgttgattgCTCTCCATATAATGAGACAAAAATAGCCATTGATAGTTTATATTCATTCATCGTGGTTCCATCAGAGGTATTTTGAGTTATGCAAGTTTCATCTTTGTTTTAAACCATGTCTGCTTCGTGTCAACCAAGATATTTTGAGCAATGCAAatttaaacattgttttcaaCTATGTCCTTTTCATGTCAGCAGGGGCATTTTTGGCTCATTAATTTTGTATTGTAGTTCCACATTGTAAAGACCTACATAAAAATATCTGTGATTTATTCAAAGAactaaaaaatgtaaactgtacAAAGTTTTTGTAAGAAAATACCTGAACAATATTTAtagtgttatgtttttatagtatgtttaatgaattaacatttctatgtgtccaaaaaaagttatttgaaaataaattactTCATATGAATGTCACTTCTTAGCGAAGCCTCTGTTTAACTGGTTATCCAAGGCTAATGTAAATCCTGATCAGACTGTCTAAGAACTGGGTAGGCATAAATAGAAACTGTATTTTGGCTGGATATTATTCCCTGTGAGCATGTCTGTTTTGAGCTTGTGTCTCGTTTgtgtttacatactgtacatacaataaATGGACTcgtgaagaaaaaataaaaatgctctGATCAACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66668 lncRNA upstream 47033 14902916 ~ 14970803 (+) False G49883
TU66661 lncRNA upstream 63446 14902916 ~ 14954390 (+) True G49883
TU66663 lncRNA upstream 80376 14902916 ~ 14937460 (+) False G49883
TU66528 lncRNA upstream 427060 14585449 ~ 14590776 (+) True G49778
TU66525 lncRNA upstream 448239 14568325 ~ 14569597 (+) True G49775
XR_005639237.1 lncRNA downstream 175182 15207742 ~ 15241127 (+) True LOC120559279
TU66801 lncRNA downstream 243553 15276113 ~ 15276360 (+) True G50002
TU66802 lncRNA downstream 244886 15277446 ~ 15277646 (+) True G50003
TU66813 lncRNA downstream 389759 15422319 ~ 15422608 (+) True G50014
TU66810 lncRNA downstream 604923 15637483 ~ 15639301 (+) True G50011
XM_039799286.1 mRNA upstream 115311 14900650 ~ 14902525 (+) True mipb
XM_039801263.1 mRNA upstream 119729 14892057 ~ 14898107 (+) True LOC120559525
XM_039801264.1 mRNA upstream 119729 14892057 ~ 14898107 (+) False LOC120559525
XM_039801261.1 mRNA upstream 119729 14892172 ~ 14898107 (+) False LOC120559525
XM_039799926.1 mRNA upstream 129705 14868908 ~ 14888131 (+) True baz2a
XM_039800884.1 mRNA downstream 147 15032707 ~ 15070413 (+) True si:ch73-181d5.4
XM_039800889.1 mRNA downstream 39361 15071921 ~ 15076945 (+) False LOC120559274
XM_039800888.1 mRNA downstream 39511 15072071 ~ 15076945 (+) True LOC120559274
XM_039800892.1 mRNA downstream 39511 15072071 ~ 15076945 (+) False LOC120559274
XM_039800890.1 mRNA downstream 39512 15072072 ~ 15076945 (+) False LOC120559274
unassigned_transcript_225 other upstream 4869 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 164209 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 165367 14852396 ~ 14852469 (+) True LOC120559927
TU66526 other upstream 440264 14574542 ~ 14577572 (+) True G49776
TU66523 other upstream 450380 14564867 ~ 14567456 (+) True G49773
XR_005639300.1 other downstream 739657 15772217 ~ 15798957 (+) False zmp:0000000926
TU66854 other downstream 831352 15863912 ~ 15867369 (+) False G50045
TU67106 other downstream 1342748 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 1342748 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 1347484 16380044 ~ 16394232 (+) False brpf1

Expression Profile