RNA id: XM_039801206.1


Basic Information

Item Value
RNA id XM_039801206.1
length 2284
RNA type mRNA
GC content 0.50
exon number 14
gene id nt5dc2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12768809 ~ 12779241 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTAAGTGAGGGCGAGGTGTTTTCATGTACTTCATGCTAGGGCTGGGCTGCAAGAATACATATTTGTCCTGCAGTGGAAGCAGTTTTTAGACGTGTTTACAtttgcacaatgacaatgtcTGTTAAGGCACTGGGCGCTATATTAACCCGTACACTGTGGACTAAAGGACACAAGACTCCTCCTCTTGCTCGATCTCCCAAAGTTAACAGACTTTCTACAACATGTAGCGTCTCCGCGGCAGGcgcagggagagagaagggctgcgaagaaaaatgtaaagtcGGCAGCTCGGACAGGCCCAGTGGCGAGGTGCCGTCATCCACCGAGCCGGCTCACAGATGCACGACTGGGGATAAGAAACGACCCACGGGACCCAAAGAGGCCGCGGGTGCTCCCGGTGTTGTTACTGGTGTTAAAAGACGGTCACACACCTCCACCGCAGTTCCAGCGAACCCGACGTCCTACCTGTGGGCTCGTTACAACGAGACCAAACGGCTGGTTCACGATGTGATCCCACCGGGTGCATGTAACCTCCTCAACTCCTCCACCATCTACGCCAACAATGAGGTCGACCTGGCTGAAGTGGACATCTACGGCTTTGACTATGACTACACACTGGCTCTGTACTCAAATGCGCTCCACTCAATGATCTACAATAAAGCGAGAGACTTTCTAATCGAACACTTTAAGTACCCTGAAGCCATCCGCAAATATGATTACATTCCCAACTTTGCCGTTCGGGGTCTTCACTATGACATCCAAAAGGGTCTTCTGATGAAGATAGATGCCTTCCATTACATTGAGCCAGGAACGGTGTATCGGGGACTGAGCCCAGTGCCAGACGAGGAGGTCCTTCAGCTCAACGGGGGGACCTACCATGTCCCCTTGCAGGAGGACAGTGGCTTCTATGGAAAGGGACCAAAGGTTAAGCAGTTCATGGACATCTTCTCCATTCCTGAGATGACTCTCTTGGCCGCGACAAATGATTTTTTCATCACCAGCGGCATCGAATACGATCCAGTTCACCTCTTCAAGGATGTCTCGGAAGCAGTTGGCATGGTTCACCTGAAAGGCTACATGTACAAATGGGTCATGAAAGATCTCGATAAGTTaattcagagaggagaggagacggcTGCTGTTTTGCATCGATTGGTCAGTCACGGAAAGAAACTATTCCTTATTACCAACAGTCCCTTCAGCTTTGTGGATAAAGGGATGACGCACATGGTGGGGAAAGAATGGAGAGACTTCTTTGATGTTGTCATTGTCCAGGCAGACAAACCTCACTTCTTCACTGATTGCATCAAACCCTTCAGGCGCTTGGATGGTAATGGAGACCTTCAGTGGGAAAAGATAAACAGTTTGGACAAAGGACAGATCTACAAACAGGGAAATCTGTTTGACTTTCTCAGACTGTCAGGCTGGCGAGGTTCAAGGGTTCTTTACTTCGGAGACCATCTGTATAGTGACTTGGCTGACCTGATGTTGCGACATGGTTGGCGTACAGCAGCCATAGTGCCGGAGCTGGAGCAGGAAACCCAAGTGGTGAGCACAAAGCGGTACGCTCTGAGCCTCACCTGGCTACAGGCTTTAACCGGCCTGATGGAACGCCTACAGACTCATCGGGACCCAGCGTCTAAAATGGTGTTTGAGGAATGGCATAACGAGAGAGAAGAACTCATGGTGATGACAAAGAACTTGTTCAACCCTCAATTCGGCAGCCTCTTCCGAACATGTCACAACCCCACTTACTTCTCCAGACGCCTGTGCCGTTTCTCGGACATCTACATGGCCTCGCTCAGCTGCCTTTTAAATTACGACCTCTCGTACACCTTCTATCCCCGCCGCACCCCCCTGCAGCACGAGGCTCCTCTGTGGATGGACCAGCTTTGCACAGGCTGCATGAAGACCCCTTTTCTGGAGGAGATGTCTCAGATACGATGAGATCTCTGTGCTCTCCTCAGTGACTGTCTGATGTTTCCTATTTTAGGCCCAGCGGACATATCttagtttcttttatatactATAGCTAGTGTTCTTTTTAGTCGAGAAGGTGCTGCACAACTCCCTCTACAGGGCGAAGGATCCCTGTTCTACCCAGTGACCCACTTCCCTGAGGAATTCACTAGAGGGTGCTGTAGACTTAGCTGCTGTCCAGAGAGCATGTGGTTCAATATTGACAGACAATCAGCTGGTTACAGCCTCAGTCAAATTGATATCAAAATGCTGAGCAATATAGAGCTACTGACGCACAAATAAACAAGTAAAATCTGACGTAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639364.1 lncRNA upstream 36392 12726600 ~ 12732417 (+) True LOC120559802
TU65816 lncRNA upstream 91131 12674342 ~ 12677678 (+) True G49301
TU65749 lncRNA upstream 107438 12660427 ~ 12661371 (+) True G49241
TU65712 lncRNA upstream 257231 12510042 ~ 12511578 (+) True G49230
TU65703 lncRNA upstream 292784 12474087 ~ 12476025 (+) True G49223
TU65847 lncRNA downstream 1374 12780615 ~ 12783788 (+) True G49314
TU65865 lncRNA downstream 49340 12828581 ~ 12840565 (+) True G49330
TU65844 lncRNA downstream 56486 12835727 ~ 12844434 (+) True LOC120559236
TU65874 lncRNA downstream 141764 12921005 ~ 12928180 (+) True G49334
TU65887 lncRNA downstream 149015 12928256 ~ 12928471 (+) True G49346
XM_039801815.1 mRNA upstream 2769 12744560 ~ 12766040 (+) True zgc:162200
XM_039801816.1 mRNA upstream 2769 12744773 ~ 12766040 (+) False zgc:162200
XM_039801817.1 mRNA upstream 46213 12708643 ~ 12722596 (+) True LOC120559796
XM_039801818.1 mRNA upstream 46213 12708643 ~ 12722596 (+) False LOC120559796
XM_039799436.1 mRNA upstream 64720 12697896 ~ 12704089 (+) True tspy
XM_039800819.1 mRNA downstream 15702 12794943 ~ 12838838 (+) False LOC120559236
XM_039800797.1 mRNA downstream 15706 12794947 ~ 12843395 (+) False LOC120559236
XM_039800804.1 mRNA downstream 15707 12794948 ~ 12843395 (+) False LOC120559236
XM_039800795.1 mRNA downstream 15708 12794949 ~ 12843395 (+) False LOC120559236
XM_039800803.1 mRNA downstream 15709 12794950 ~ 12843395 (+) False LOC120559236
XR_005639089.1 other upstream 110501 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 310370 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 545171 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 558400 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 671972 12092779 ~ 12096837 (+) False LOC120559364
XR_005639216.1 other downstream 81480 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 753149 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1333809 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1334027 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1334027 14113268 ~ 14121022 (+) True hmga1a

Expression Profile