RNA id: XM_039801221.1


Basic Information

Item Value
RNA id XM_039801221.1
length 4372
RNA type mRNA
GC content 0.50
exon number 3
gene id zmp:0000000926
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15772217 ~ 15798957 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgcatgtgtgcttgaTGAATGTGAGCTTTAGTTTTGAGTCAGAGGCATAAGCAAAAACCTAAagtctgagagtgtgtgtgggatGAGCCTCCTACCAcgtccctccctgtctctcatcaactgtctctctgcctcccctTCATCCTTTCCTCTTTTTTATGTGTCAACATTTCTTCAGAAATATAGATTAACTGATTAATTGATCCATTCATGACTTTTGTAtgttaaaagatacatttaacCAGTTAAACTTAAGTGGAAAGCATACCTACAGACAACAAGGTGGCATACAGTCAATTTATCCCGCCCAGTATATAATCTGTATGTGCTGCATCcttgactgtttgtgtgtgtacatttgtgtgtacatttgtgtgtgtatatgcatgtttGTATCCTTCACAGTGATTAAAGCAAGTGGGCGGCAGCAGCAACTGGTCTGCATAGCAGACATGTTTCTCACTGCTAGATATTACTCATTTCCTCAGCCCTTTGCACACataagcacatacacacacactcttgacacacacagtcacatacacaaCAGATACTGAGACGGATAGCAGGCTCTCAGTTCTTTCCCTCAGTTTGGTGGGCTCGCTGGTGTTTATTTCATGCGCACAGAGATCAGAGGCAGTGTGTAGCTGGGGGCTGCTGATATCCGCGGGTGTTGTAACTGGTGGCATTGCTGTGGAGGAGCAGTGTAGCCCAGTGAGGAGCTCAGGAGTGGGTTGACCCTCTGGGAGGACTGGAATATGAATGACTGCCAAGACTGGGACGTCGGCTCAGCCTGCACTAAGGTGAGTGGCGCTCCAGTGCAAAAGAATCAGCAGTGATCTGACAGGGATGCTGTGTAGCAGCCTTCCCCTCTGTCTGCGCCCCTCGTTCTCCCGTGAGGCCCATGTGACCTAGCCTACACCCGCACACAGGGGGCCCCCAGTGCCGCTGGAGCCCACCCATGAATCCCAGCCCCGACCGCGGCAAAGAGTGCCTCCCTCCCAAGAAAAGGGAGTCTCGGCAAGGATCGTCAGAACACCACAATCCTCTGGACGAGTTTAAACCCCCAGTGCCACTCCGGAGTCGGTCCAGCgcagggggaggggagggaggcagggaggccAGTGACAGGGACCGAGCTCTGATTAACCCAAATCCCCATCTCCTACATACTCCTCCACCCCTTCCTGCTCCAGCACCAGGCCTAGCACTGCCCCTACCATGGCACCTGAGCTACTCTCCCTCTGTATCTCTCCCCCTTTTCCCAGGGCAGGTCAGCGAGAGGATGGGCTCAGGGTCTCCCGCCTGGAGAGATGATTCTCATCCCTTGCCTCTGTCCCACCACTCCAGGTGGCTTAGAGGGGATGGGCCCCTCTCCTTGCCACCCtccccatcctcctcctccgcttcctccttcAAGACTCCCTTCCCAGCCGATTCTAGAGAGATATGGTCCTACATTAACAGTGGCCGGCGGGACAACAGCTCATCTCTCTTCTCCCCATCATATTTGTTTAGCCACCACTCTCTCTACCCTCAACAGCCAAGCTTTGTTGAAGCCAGACACAGATATTTGGGTAAGAGGCTCAACGGCCTGGATGGGCCAGGCAGCAGGACTGCCTCAACCTCCAGGCCTCTGCTTACAGGAGAATATGGGAACGATAGCAGCAGATCACGGCTGGACATCAGTCCACACAGCTCCCATACCAACGGTGGACGGAGACAGCAGGAGGATCTAACATCCCGTGTCCATTCTGGAGGGCCATTTTTGTCAGACTCTCAAGCTCAGGAGGGCCCTGAGCCACATTCCTCACTGCAGGACAGACATCCACATGGGATGGTTAAGACCAGCCTACTCTCCACCAGTCCCCATCCCCTCGGACCAGTCCCCAGGGCAGGTAGAGGGGGACTTTTGGACCCCCAAGGGGTCACACCAGCTGAAGCCCAGATCTACTACTCCTTGGGATCAGTGTGCCACCCCAGCCCTCAGGTCCAAGCATACCCACTCTACAGCCCCTCAGGAACAGCTCTGTACAACCTGCACAGGGAGCCAGGACCCAGGCAGCACAATCAAAGGAACTCACCACACTCACCCCTGGGTCTGCCTAACAGCCATGACAGGTCACAAAGAGACCGGGACAGAGaccaggagagagacagagaaaatctTCTACAAAGGGACAGGGAGCAAGGTAAAGACAAAGAGAAGCACCTACAACGTGACAAAGACCAAGAAAGAGACAATGAGCGCGAGAGACGACgggacagagaaagacacagaggTAGAGAGTCATCTCCTTCTCATCCTCACACCTCAGCCCCGGCCCTTCACTCATCTCCCCCTGCGCTCCTACCTTACTTCACCAAGGGTTCTCTGATTGAGTTGGCCAGCGGGCGGTTGAAGagggtggaggagctgcagacCGAGGACTTCCTGAGGAGCGCAGATACCTCCCCAGAGTTCCACCTCAGCACATGCACTGTGCTGCTGATTTCCCCCAGCAGTGCACAGGGCTTCAGCCACCTGCAGGTCCACCTCACAGACCGCAACACTCAGgAGTTACTGAAGGTCTTGGTGGAGTATCCGTTCTTTGTGCAGGACCGAGGCTGGTCTTCTTGCTGCCCTGAGAGAACCACACAGCTGTATGGCCTGCCCTGCCGCCAGCTCATGGAGGGGGATGTCTGCTTGGCTCTCACCCCCACTCCCACCCAAACTCACCGGACACACACGCGCACTGGCTCCAGGGCCCATCGCACGCAACTCTCCTCCAGGGCTGCAGGAGAACCCAGTAGCTCGCACAGGGAGGAGATGccacctccccctcctccccctcctcttcctcaccatCCACCTCCTACTCTGCCGGCACCTTTACGCGCTCTGGCTGCAGAGCCTCCCGCTCAGGAGCAGCCGCGTCCACGCAAACGGCGTTGGTCTGCCCCAGATACCCTTCCCTCAACCGGAACTGTTGAAAGCCTCCTGGATTTACCTCATGGCTCCAAGCTAATGAAGTGGCAGTAGAAACTTGGAAATGCATACATATACATgcataattacacacacacacacacacacacacacacacacataagcacatACACACCCTCCTTGTCTCTGTTGCACCCACCATGACAAACACTGGAGAGACCTTAAGGTAGGGTTGCAGGGAAGGAATAAAAACAATAGAAAACGCAATTTACGGGTGTCCACATTGTTGCCCAAGATATTAACCTAGTCCAACCTAGTCTGGCCCTTGTTGCATCTTttattcctttcctttcctttccctttcctttcctttcctttcctttcctttcctttcctttcctttcctttccctcAACCTTACTCAGCACAATCCTGAAAGGAGCAGCAGCTGAACGATCTCTGGATGACTCCTTACAGACACACTGAAGACATTTAGTGAGACAATCAAGCACTTGTCTGTGTTCACTCTGTTTTTGTAATGGTTGTCCCAAGCACCTACTTACTGACAGTGTTTTCTGCAGGGTTTTCGATTTTCAATCAGTGTTATGAAAGTAAACGCTATTGAAGAAGTGCAGATATATATGAACAAAAGTTgactatatatattacattacagATGTTATATTCAGTAAATATGCTAAACAGATTTAATGCAATCTCTCTGTCAATTTCGcaatgcatttttgtttttttaattgtcttgCTTCTGAGCCGATGTCTACATGTCGGCCCGGGCAGGCAAGGTGAATGTATGAGCAACTCTTCGCCTTTTTTATTCTCATCACTGGGAGTCCTTTCAAACAATTGATTGTTCGTCAAGGCATTATCCTCCAATATGTTCTTAACGTTATCTCTGAGAAAGGGAGAACACTAATGAAAACTGCGTAACAGACAATCCCACCCACACAGACAGGTCTGTGCCACATCGCCTCGACACTCATGGTGTTTTTCCATTAAAAACTGAATGATGGAAAGATTCAAAAGTGCAGTATGGCATAAGAGTAATGGTGCTAATAACACGTTGGAACATGATGCTTTGTGAATACCCTCGACCCCTGTGTACGCTTCTGTTCCCATCTCATTTTTTACGTACTGTATTTGTTGAAGGCAGGGAAAATGATGAAAGTATTTTAAACTCAGATACGGGTATCTCCTCTGATTCAGCACACTCTCTCACtttagtttttgtgttttttgttttttaaattttattttcaaacagaaAACCTTACCTgttgattttttctttttaaatgttatagctacaaaaatgtatatttttaaaaattgtGAATCTGTTATATGATGTTCGCtagaaataaagggaaaaaagctttaTAGATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66832 lncRNA upstream 78965 15705096 ~ 15705468 (+) True G50029
TU66817 lncRNA upstream 114889 15667249 ~ 15669544 (+) True G50017
TU66818 lncRNA upstream 114889 15667249 ~ 15669544 (+) False G50017
TU66810 lncRNA upstream 145132 15637483 ~ 15639301 (+) True G50011
TU66813 lncRNA upstream 361825 15422319 ~ 15422608 (+) True G50014
TU66852 lncRNA downstream 70751 15862808 ~ 15867369 (+) True G50045
TU66873 lncRNA downstream 101968 15894025 ~ 15969331 (+) False slc6a1a
TU66894 lncRNA downstream 157192 15949249 ~ 15951172 (+) True G50077
TU66874 lncRNA downstream 172966 15965023 ~ 15969331 (+) False slc6a1a
TU67072 lncRNA downstream 493500 16285557 ~ 16285759 (+) True G50218
XM_039799250.1 mRNA upstream 84057 15697279 ~ 15700376 (+) True mtg2
XM_039801995.1 mRNA upstream 87555 15687325 ~ 15696878 (+) True LOC120559909
XM_039801996.1 mRNA upstream 87555 15687325 ~ 15696878 (+) False LOC120559909
XM_039801997.1 mRNA upstream 87555 15687325 ~ 15696878 (+) False LOC120559909
XM_039799840.1 mRNA upstream 98242 15682260 ~ 15686191 (+) True lsm14b
XM_039799353.1 mRNA downstream 41126 15833183 ~ 15840777 (+) False spo11
XM_039799354.1 mRNA downstream 41126 15833183 ~ 15840777 (+) False spo11
XM_039799355.1 mRNA downstream 41128 15833185 ~ 15840777 (+) True spo11
XM_039799422.1 mRNA downstream 49886 15841943 ~ 15847795 (+) False LOC120558427
XM_039799421.1 mRNA downstream 50690 15842747 ~ 15847795 (+) True LOC120558427
unassigned_transcript_225 other upstream 771466 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 930806 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 931964 14852396 ~ 14852469 (+) True LOC120559927
TU66526 other upstream 1206861 14574542 ~ 14577572 (+) True G49776
TU66523 other upstream 1216977 14564867 ~ 14567456 (+) True G49773
TU66854 other downstream 71855 15863912 ~ 15867369 (+) False G50045
TU67106 other downstream 583251 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 583251 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 587987 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 607140 16399197 ~ 16405605 (+) False LOC120559923

Expression Profile