RNA id: XM_039801226.1


Basic Information

Item Value
RNA id XM_039801226.1
length 2978
RNA type mRNA
GC content 0.47
exon number 23
gene id qars1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16709978 ~ 16718188 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCCTCCTCGCTCTCTCTCCGAGAAGAAAACTTGTGTGTGGCGGTGGCGTGTCTGAGTGGTTCCGATCGGTGGAAAAATGGCAGATACGGTGGCACTTTTCACTTCCATTGGGCTCAGTGAGCAGAAAGCGAAAGAAACTCTGAAAAATGAAGCGCTGAGTTCTGCCTTGAAGGACGCAATTGTTCAGGCCCAACGAGTCCGTGGGGCATCAGGAGTGGACAAAGCCATGGGCACATTGCTGTACAGTATGGCATCTCGCCTTAAAGACACCAGACGCCTGGCATTCCTTTCAGACTGCATAGTTCAGTGGAAAATCACCACAGAGCTACAGCTGGCAGCTGCACTTGAATTTGTGAAGAGTCATCCTCAGGACCCCATCAACCAGAGGGAGTTTGAAGAAGCATGTggagtgggcgtggtcataacCCCGGAACAAATTGAGGATGGAGTTGAATCGGTGATCAAGAAGCACAAGGAACAGCTGTTAAAGGAGAGGTACCACTTCAACATGGGACTGCTGATGGGAGAGGCACGCTCTGCCCTTAAATGGGCTGATGGAAAGGTCGTCAAAAATGAGGTGGACATGCAGGTCCTACACCTCTTAGGACCCAAGACCGAGGCTGACCTGGAAAAGAAACCTAAGCCCCAGAAAGCTAAAGTCGCAGAGAATGAAGTAAAGGCAAAGAAAGAGGAGGTGGCAGTGAATGGTGAGGCGATGACTGGGGAGGGAAAGTCACTTATGGAGCAGCTCAGAGGAGAAGCTCTGAAGTTCCATAAACCAGGAGAGAACTATAAAACTGAGGGCTATGTGGTCACACCAAAAACAATGGACTTGCTTAAAAAGCACATGGAGATCACTGGTGGACAGATACGTTCTCGTTTTCCTCCTGAGCCCAACGGTATCCTTCACATTGGACACGCCAAAGCTATCAATTTTAATTTTGGTTATGCAAAGGCAAACAATGGCATTTGTTTCTTGAGGTATGATGACACAAAtccagagaaagaggaggagaaataCTTCACTGGTATCAAGGACATGGTGGAGTGGCTTGGCTACGAACCTCATGCTGTCACGCATGCATCCGACAACTTTCAGCAACTCTACGACCTCGCTGTGGATTTAATTCGCAGGGGTCATGCGTACGTGTGCCACCAGAAAGGGGAGGAACTGAAGGGCCATAACGCTCCTCCGTCCCCCTGGAGAGACCGACCCATTGAGGAGTCGCTGGTGTTGTTTGAGAGGATGAAAAAGGGGCTGTTTGCTGAGGGAGAGGCTACGCTCAGGATGAAGATGGTCATGGAGGACGGGAAGATGGACCCCGTGGCGTACCGAATCAAATACACGCCACATCATCGGACAGGGGATGAATGGTGCATCTACCCCACGTATGACTACACCCACTGTCTGTGTGACTCCATTGAAAATATCACACACTCCCTCTGTACCAAAGAGTTTCAGGCCAGGCGTTCATCATATTACTGGCTGTGTAATGCTCTGGATGTATACTGCCCAGTTCAGTGGGAATATGGGCGCTTGAACCTCACCTACACTGTTGTGTCAAAGAGGAAAATCATCAGACTGGTAGAGGCTGGTGTTGTCAGAGACTGGGACGATCCCCGACTCTTCACTCTGACTGCGCTGAGGAGAAGAGGTTTCCCAGCAGAGGCAATTAACAACTTCTGTGCACGGGTCGGAGTCACAGTTTCCCAGACGACGACAGAGCCCCACCTTCTGGAATCGTGTGTGAGGGACGTGTTGAACGACACTGCACCCAGAGCCATGGCTGTGTTGGAACCACTTAAAGTCACCATAACTAACCTACCTGCGAACTCAAAGTCAGAAGTACGAGTGCCAGACTTTCCTGCCAACGAGGCCAAGGGCAGCCACACCGTCCCATTTACACACACAATCTTCATTGAACAGAGTGACttcagagagGTATTGGAAAAGGGTTACAAGCGTTTGACTCCAGAACAGCCTGTAGGTCTAAGGCACGCTGGGTATGTCATCTCTGTCCAGAAGGTCATCAAGGACACTCAGGGTAAAGTGGTTGAACTGGAGGTGAGCTGTTGCAATTCTGAGAATGCAGAGAAACCAAAGGCCTTTATCCACTGGGTCAGCCAGCCATTGATGTGTGAAGTGCGCCTTTATGAAAGACTATTCCTGCACAAACATCCAGAGGATCCGTCTGAAGTGCCCAATGGCTTCCTGAGTGACATCAATCCTAATTCCCTGCTTGTGATCAGCAGTGCCTTAGTTGATACCTCAGTAAAGGGAGCAAAGGTTTTTGACAAATTCCAGTTTGAGAGAGTCGGCTACTTCTCCCTGGACCCCGACAGCACTGCAGACAAGCTCGTCTTCAACAGAACAGTCACCCTCAAAGAAGACCCTGGGAAGATCTAATTGACAGAGATCAAGCCGCTTCACATGAGCCCACAGATACATGTCCAAATTGTTTGCATCAATTAATGTGTAACATCAGCAAGGGCACAGACTGATCGAGTTGAGATTGACTCAGAAAAGATACCGTAATAATTACATGTCcatatttttttctaaactgCAGTTCTCTTTCATGGATCTGTGTTGCTGAAATTGGGAAAATATAATTGTCGGCTGCGAAAACAAAATTACTGCAGTATCACTTCTCACAATCTCAACTTTGGTCACTCAGTGTAAGAGTCCTCTTGACTCATTTTTCTATATCTGCTGCAATAATATTCACTTACAGTGTTTCTTCTTTGTTGAATTGATGCAACTCTGATCATTGTTCAACAAGGATGACATGTATATTATTGTAATATTGGCTCGAAACTGGTGTTACACAGGAGATGCTCTCAAATGGAATGCATGACTTTCTTACAAAGGTGGTAGATCCTTGCCAAACCATAATGTGTTTTTTAGACTCAGAGGGGTGAAcgtgtgtcattttgacacgtgacaagaataaataatataaaataaaaaacctg

Function

GO:

id name namespace
GO:0006425 glutaminyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004819 glutamine-tRNA ligase activity molecular_function

KEGG:

id description
K01886 QARS, glnS; glutaminyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639303.1 lncRNA upstream 26444 16680581 ~ 16683534 (+) False LOC120559512
XR_005639304.1 lncRNA upstream 26444 16680581 ~ 16683534 (+) False LOC120559512
XR_005639302.1 lncRNA upstream 26444 16680586 ~ 16683534 (+) True LOC120559512
TU67237 lncRNA upstream 83760 16605965 ~ 16626218 (+) True G50326
TU67228 lncRNA upstream 128985 16580059 ~ 16580993 (+) True G50320
TU67374 lncRNA downstream 108692 16826880 ~ 16829880 (+) True G50410
TU67495 lncRNA downstream 380434 17098622 ~ 17104964 (+) True G50493
TU67525 lncRNA downstream 416500 17134688 ~ 17135490 (+) True G50505
TU67530 lncRNA downstream 432994 17151182 ~ 17151913 (+) True G50509
TU67540 lncRNA downstream 444991 17163179 ~ 17163665 (+) True G50518
XM_039801232.1 mRNA upstream 30634 16670828 ~ 16679344 (+) True LOC120559511
XM_039801230.1 mRNA upstream 43329 16660467 ~ 16666649 (+) True LOC120559510
XM_039801225.1 mRNA upstream 60831 16646183 ~ 16649147 (+) True b3galt4
XM_039800555.1 mRNA upstream 84560 16618463 ~ 16625418 (+) True LOC120559103
XM_039800554.1 mRNA upstream 96190 16611217 ~ 16613788 (+) True trh
XM_039801199.1 mRNA downstream 984 16719172 ~ 16726239 (+) True LOC120559487
XM_039801200.1 mRNA downstream 984 16719172 ~ 16726239 (+) False LOC120559487
XM_039801780.1 mRNA downstream 14806 16732994 ~ 16740699 (+) False LOC120559776
XM_039801779.1 mRNA downstream 14812 16733000 ~ 16740699 (+) True LOC120559776
XM_039801462.1 mRNA downstream 100651 16818839 ~ 16820426 (+) True LOC120559617
TU67161 other upstream 304373 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 315746 16380044 ~ 16394232 (+) False brpf1
TU67106 other upstream 330334 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other upstream 332489 16375308 ~ 16377489 (+) False LOC120559119
TU66854 other upstream 842609 15863912 ~ 15867369 (+) False G50045
XR_005639235.1 other downstream 259710 16977898 ~ 16994701 (+) True eif2d
TU67547 other downstream 467723 17185911 ~ 17197173 (+) True G50523
TU67812 other downstream 1023272 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 1963955 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 2011292 18729480 ~ 18729551 (+) True trnaa-ugc_5

Expression Profile