RNA id: XM_039801261.1


Basic Information

Item Value
RNA id XM_039801261.1
length 1869
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC120559525
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14892057 ~ 14898107 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGCAGACAGACGGACAGCCAGAAAGACAGACTGATATACAGcgagaaaaaaacaactgagtTTGAAATGACGTGGCGTGAGGCCACCTTTGTTTATGTCCCCTTTCTTTGAGGAGCTACGTAGTAAGCAGTTCTGGCGCGCCATTCTTGCAGAGCTGCTTGGCACCCTGGTTTTAGTGAGCGCCGTGCTGGGTGCATCTGTGCCAGGCCCTGGAGAGGCCCCCACGGGACCCCTGTACCCAGCAGTGGCAGTGGGTGTGACGATTGTCGCACTGGGACACTGTTTTGGAGAAATAAGCGGGGCACAGGTGaaccctgcagtgactctggcTCTGTTGGCCACTCGGAAGCTGGAAGTGGTCAGAGCTGTTGTTTACATGGCTGCACAGTGTTTGGGGGCCTCTTTAGGAGCTGGGGCCCTCTACTTGGCCCTGCCAGTCAAAACCACTGCAGACCACTTTGTCAACAGGGTTCCTATAGAGTTAAATGCAGCCCAGGCTCTGGGCATGGAGGTTTTGTGCACCTTCCAGATGGTCTTCACTGTGTTCTCAGTAGAGGATCAGCGGCGGAGGGAAAGCCCAGAACCAGGAAACCTGGCCATTGGATTAGCACACACTGCTGGAGTGCTAATAGGGGGGCGGTTCTCTGGTGCTAGTATGAATCCCGCACGTTCTCTGGGTCCAGCCATCATCACTGGATTCTGGGAAAACCactggGTTTATTTGATCGGACCAGTGATCGGTGCTATACTGGCTGGAGTGTCCCATGAGTTCTTCTTTGCACAAAGCGCCTCTCGCCAGAAGCTGGTGGCTTGTCTGACCTGTAAGGACATAGAGATTGTGGAGACGACCAGCATGACGGGATCATCTCTGTCCACAGTCACACCAAACGCCATGAGAGCCAAGCAGGCcaacaaacaagaaaacaacTGAGAACACAtgcataaacaaacacatagaaacacaataTTACAGTGATTTTTATGAAGATGCATAGTGTATCAGTCGTGCAGATCTGGCTTGACGGCGGGATTTAACCTACTTTCATTATTACTGTTTCAGGTTCTGAAGcactttatgaatgaaatgaagAAGTATTAAAATTCCTTACTTATAGCAACACCTCAAGAGATAAATTGAACAATTGTTTATTAATTATAAGATTGATTATAAGTTTCATCCCCAGATCTTTCTTTTAAAGTGTCCTTgtgcaagacactgaaccctgaaaTGTGTCCCACAATGATAAATCCAACGTTTATTAACTCAATTAATAACTTTTTTCTATAACCTTTCAGAAATGTTTAAGGAAATGatgaaatataaatgaaaatgatgAAATGGCCATTATAATTTCCCAAAGCCTAAGGTAttcaaatgtgttgttttgtctgaccaacaatcTAAAACTAAAAACTTAAAGCTATATTGTGTAAggatttctcccatctagcggtgaaattgtatatgacaaccaactgaatattactttctagcccttcctcctaCGGCGGCTGAACCCAAAATTAGctctctccatcgtttacacgcagctgttccagccactccaatattaactttggtcttgttgctttgcctgtcgcgttgttgttttaattgtctttttcgcttccctggcgagtaatctcccccttgcattcgtcacggtgccaataGGTGTACGAGGGTGAAATGCGGAGGtgtgtccctctttggctaatgtattttaaagatggaggctaCATGACTACCGTCATTCGGGCGAGTCGcttgtatgtattctgaatgattctgaatgtcagtTTCTAcacttacgagaatactttgattagttggtggtagtaattacacatgaatgagcacatatttgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66528 lncRNA upstream 301396 14585449 ~ 14590776 (+) True G49778
TU66525 lncRNA upstream 322575 14568325 ~ 14569597 (+) True G49775
TU66510 lncRNA upstream 340613 14551310 ~ 14551559 (+) True G49764
TU66508 lncRNA upstream 345077 14546864 ~ 14547095 (+) True G49762
TU66507 lncRNA upstream 345450 14545395 ~ 14546722 (+) True G49761
TU66661 lncRNA downstream 4809 14902916 ~ 14954390 (+) True G49883
TU66663 lncRNA downstream 4809 14902916 ~ 14937460 (+) False G49883
TU66668 lncRNA downstream 4809 14902916 ~ 14970803 (+) False G49883
XR_005639237.1 lncRNA downstream 309635 15207742 ~ 15241127 (+) True LOC120559279
TU66801 lncRNA downstream 378006 15276113 ~ 15276360 (+) True G50002
XM_039799926.1 mRNA upstream 4041 14868908 ~ 14888131 (+) True baz2a
XM_039799786.1 mRNA upstream 25149 14862512 ~ 14867023 (+) False LOC120558671
XM_039799785.1 mRNA upstream 25149 14862518 ~ 14867023 (+) True LOC120558671
XM_039799780.1 mRNA upstream 38355 14845338 ~ 14853817 (+) True naca
XM_039799286.1 mRNA downstream 2543 14900650 ~ 14902525 (+) True mipb
XM_039801154.1 mRNA downstream 114109 15012216 ~ 15032560 (+) False LOC120559459
XM_039801153.1 mRNA downstream 114109 15012216 ~ 15032560 (+) False LOC120559459
XM_039801155.1 mRNA downstream 114110 15012217 ~ 15032560 (+) False LOC120559459
XM_039801156.1 mRNA downstream 117287 15015394 ~ 15032560 (+) True LOC120559459
XR_005639381.1 other upstream 38545 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 39703 14852396 ~ 14852469 (+) True LOC120559927
TU66526 other upstream 314600 14574542 ~ 14577572 (+) True G49776
TU66523 other upstream 324716 14564867 ~ 14567456 (+) True G49773
TU66275 other upstream 771150 14113268 ~ 14121022 (+) True hmga1a
unassigned_transcript_225 other downstream 114788 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639300.1 other downstream 874110 15772217 ~ 15798957 (+) False zmp:0000000926
TU66854 other downstream 965805 15863912 ~ 15867369 (+) False G50045
TU67106 other downstream 1477201 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 1477201 16375308 ~ 16377489 (+) False LOC120559119

Expression Profile