RNA id: XM_039801315.1


Basic Information

Item Value
RNA id XM_039801315.1
length 3839
RNA type mRNA
GC content 0.43
exon number 10
gene id LOC120559547
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13564625 ~ 13605435 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTCCGGGTCGTGGACAGAGGTGGCTTGCGTTGACAGCGGCTGGCACTGAGCGAAGTACGGCGGTACAGAATATCGTCCGTTTGGGTTTCTTTTAGGGGTTTCACGTTTCCAAAAGTTGACATCTGCAAGTATGCAGTCTGAATCGGGAATAGTTCCCGACTTCGAGGTTGGAGAGGAGTTCAAAGAGGAACCTAAAACGTATTACGAATTGAAGAGTCAACCCTTGAAAAACAGCGGCCCGGCGGAGCAGCACAGCTCCTCCAAGCCCCCGCTGAGCTCCTCGGCCGTGACATCACGCATCCTGCTACGGCAGCAGCTGATGCGGGAGCAGCTTCAGGAGCAGGAGAGGCGGGAGCAGCAGAGACAACAGGCCTCCCTGTACCCACAAACCACGGTGGCCCAGACCCCCGCCATCAATGTCAGCGTCCCCGCCACGTTAGCGCCTGCTGCCCAGGTGCCAATGGAGGTGCTCAAGGTCCAGACTCATCTGGAGAACCCAACCAAGTACCACATCCAGCgctcccagcagcagcaggtgaaGCAGTACCTGGGAAAGCTTGGCTCTCAGGTGTTGAGCTTTCCCTGCCACAACCAGTCCTCTGACCACGGGGGCATGCCGCCAGGGCCGGGCAACAGCGCCCCCAACAGCCCTATGGCCTTACTGACCCTCAACACTAACTGCGAGAAAGAGATGGATGATGTCATTGATGACATTATTAGTCTGGAGTCCAGTTACAGTGATGATATCCTCAGCCTGATGGACCCAGGACTTCAGATGGCTAacacgATCCCCTTGAATGCCAACCTCATGGACATGTATGGTAATCAGAGTATGTCCCAGCAAGGTCTACCCATCAGCAACTCCTGCCCTGCCAACATCAAAAGGGAATACTCTGTTTCACAATCCCCGACCATCATGCATATGATGGATAAGTCTGGTTCCTGCGGCAAATTTGACAACTACCAAAGGCCTGAAGGGTTCCCTGTGGCAGAGGTAAGAGCAATGGCAAAGGAAAGGCAGAAGAAGGATAACCATAATTTGATTGAGAGAAGACGACGGTTTAACATCAATGATCGAATTAAGGAATTGGGCACTTTGATTCCTAAATCCAATGACCCGGACATGCGCTGGAACAAAGGCACCATCCTGAAGGCATCAGTGGACTACATCAGGAAACTACAGCGGGAACAGCAGAGGGCCAAGGACCTGGAGACTCGCCAGAAGAAGCTTGAGCATGCCAATCGACACCTGATGTTGAGGATACAGGAGCTAGAGATGCAGGCGCGGGCTCACGGTCTGGTCATCACGTCTTCAGCACTCTGCTCCGCTGAACTTGCGGCCCGGTCCATTAAGCAGGAGACGGCTCTGGAGGACTGTCGCCAGGACCTGTACACGCTCCACCCCCATCACCAACACCACACGTCCTGCACTCCAGAACCGCTCGGCACCTTGGAACTAAACGAAGGCCACTCCAACTTCCCAGAGGGTCACTACAGCATTCACGGGAAGCCAGGCTCCAAACTCAACGACATCCTCATGGAAGATACCTTATCACCGGTGAGAGGGGGGGACCCTTTGCTCTCGTCCGTCTCCCCAGACACCTCAAAGGACAGCAGTCGTAAGAGCAGTGTAAGCATGGATGAGAATGATCAGGCCTGTTAGCACCCCCTACTGGAAAACACCTCGTCTGCATCCCCAACCTTCCTGCTGCAAGTGTTCCCGTCAGTAGCTAACACACTCCCAGCTGCTGGAGAggcctttttttctgtttgtgtcatttgttttttgtgtcgTTTTTTCTCTTCCCCTCCCGTGTTTACATGTATTGAATAGTTTCCATTCATGTTTTTGCTAGTTTTTATGCGATTTCTTTGGTCTTTTTAAACCCTCAACCTTGATTTCAAGGACTGATTATAAAGTAGGTTTGCTTTAATCAATACTTTGACAATGAGTTGCAAACAtagacttttttatttaaaagaaatgcatttATCTTTGAATAGAGGTTAAATTGTGTGTATTTCTATTGATTCCAAAGAATCTAGGGAAGTTATGAATCATGGTCAGAAATGTAGATTTTTGGGTTGAGATGAACACTGCTTTTTAAATCACTAGCAATAATAGAAGaaataaaatctatttattACTATAGTGCTTTACACTTGTGTCTTAGATTGAACTTGAATGTGCCAATGCCTTATTAAGATGTGTATACATCAGTGTTGTATTGCTATGCACATTTTTTGGCTGTTAGCTGAGTCGTTGTCAGGCTTCCAGTTGAAATTTCTTCCTCGACAAATAATCATTTGTAGATTTGATCTTATTTATGCATCTGTAAACAGGACTTTATGTACGCatttcccttttaaaaaaaaatatttttaacaaggcatttaaatttaaattttttaaataactgacATAATAAAAAGCACATCAAATATAGCAAACTAAAATGTGTCCTTCAagttaattaaaaagaaaaaaaaaatcaccattGACAATGGCTAATTGTAGTCTTTTACTCAGTGTCATAATGAGCAAGAAGCAGCACAACAATCcagaaacaaaaagagaaaagtcaAGTTTGACTGCACTGTTGCATCCTGTAACCATCCAGTTCTGACTGCTCAGCATGTGTACCATTATATACATTCCTCACTGCCAAAACCAATTGTATTTTTCATAATGCAGTCTCAAAACTAGTAAAATCGTAGCTCAAATTAAAAATGCCTGTTGTAGCCCCCACTCAAGCACAATAATCTGATTTCACTTGAAAGATCTGATTGTTGCATAATTCTAGAAATCTTTGATAGATGATTAATGCAAGATGAACCACTTATGTTTTATTGTATTCTTGTCTGCAGTGATCAGACTAACAGAACTGGTAATACTGCTACTATTTTAGCACACACCGTGTAATACCTTGGACATGTGTTGATGCAAGTGCTGAGTTTTTATAAATGTCCATCCATTTCCtaaattattattgttgtttttacaccaCTTAGGTGACATTTCACATtcaggatgtttttttgttttttttctcattaagTGAACATTTATATTGCCAAGGAGTATAAGGAGACTGCTTTGGGATTTTGTATGAAATGCATGTCATGTCAAAACACTGGAATGACCTCTGTAATTTGAAACGCGGtttgtttgcctttttttttttatctaagcATAAACTAACTATTGTATTTGGCTTttcaaatgcatacaaaataTTGTATGCGATTGTAGATTCTTCATGGTGTACTGTTGTATATTATTTCAGCAGTTTGTTTCAACAGTTGTAGCACATTGCATACGTATGCCTTTGTTAATAACTACCTGCCATACTTTGAGAGCCCTGTTACAGCACAGCCTCCATTTTGTTAAACTATGCAATGGTTGAAGTTGTGCCTGCACAGCAGCATCGTCGCTAGATAATGTGATCTCCTTATGAATTAGTCTGAAACAGTGTCAAAGTATTTATCGTTTTGATTGATTTAAGTGCCTTAAAGTCGTTTATGTTACCCTGGTGATGTAAGAGGAGTTGTAGACAGTGATGCAAAATGTTGTTGATGCTTATACTGGTGTTTGGTGCTTCAAGGATTAACTGAAGAGTGTCAAAGTAATTTAGAAAGCAGTAGGAAAGGGCCGTCTGTCAGTACAAGATAACACTATAACCCTCTCAGACTTAAGACATGGTTTGTTATGATGGAACCCCCAAGTGTTCAGTACTTAATAAATAAGGCATTAATAAATGATCATAAAAGTAAATAGAGTTAAATGTGTAAGTAAACCAATGAATTctgaaataatttaataaattattaaaagtca

Function

GO: NA

KEGG:

id description
K09455 MITF; microphthalmia-associated transcription factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66127 lncRNA upstream 118830 13445139 ~ 13446735 (+) True G49508
TU66121 lncRNA upstream 132348 13432599 ~ 13433217 (+) True G49502
TU66078 lncRNA upstream 187156 13365731 ~ 13378409 (+) True G49474
TU66077 lncRNA upstream 197246 13365731 ~ 13368319 (+) False G49474
TU66038 lncRNA upstream 257993 13306840 ~ 13307572 (+) True G49461
TU66203 lncRNA downstream 11442 13616877 ~ 13641874 (+) True G49562
TU66214 lncRNA downstream 31431 13636866 ~ 13639093 (+) True G49572
TU66235 lncRNA downstream 58452 13663887 ~ 13724990 (+) False LOC120558697
TU66236 lncRNA downstream 119653 13725088 ~ 13728097 (+) True G49585
TU66237 lncRNA downstream 119653 13725088 ~ 13732249 (+) False G49585
XM_039800757.1 mRNA upstream 34077 13527308 ~ 13531488 (+) True LOC120559207
XM_039799318.1 mRNA upstream 66123 13474266 ~ 13499442 (+) True LOC120558357
XM_039799317.1 mRNA upstream 66123 13474266 ~ 13499442 (+) False LOC120558357
XM_039800980.1 mRNA upstream 113658 13448308 ~ 13451907 (+) True slc16a7
XM_039801794.1 mRNA upstream 273253 13284381 ~ 13292312 (+) True pm20d1.2
XM_039800919.1 mRNA downstream 37194 13642629 ~ 13649896 (+) True LOC120559296
XM_039800920.1 mRNA downstream 37194 13642629 ~ 13649896 (+) False LOC120559296
XM_039801872.1 mRNA downstream 46933 13652368 ~ 13654660 (+) True guca1b
XM_039801870.1 mRNA downstream 50118 13655553 ~ 13657376 (+) False oard1
XM_039801871.1 mRNA downstream 50278 13655713 ~ 13657376 (+) True oard1
TU66161 other upstream 30643 13532390 ~ 13534922 (+) True G49538
XR_005639216.1 other upstream 681278 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 907257 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 1107126 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1341927 12223567 ~ 12223638 (+) True trnae-cuc_14
TU66274 other downstream 507615 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 507833 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 507833 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 959432 14564867 ~ 14567456 (+) True G49773
TU66526 other downstream 969107 14574542 ~ 14577572 (+) True G49776

Expression Profile