RNA id: XM_039801420.1


Basic Information

Item Value
RNA id XM_039801420.1
length 1848
RNA type mRNA
GC content 0.47
exon number 9
gene id fbxw12
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16162697 ~ 16173601 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCTTGTCCCTTTATTCTTTCCGTAGCAACCCCAAATGTAGCTTTTCCTTTGACGTACAGTTGGCGAGGAGCTGCAATATTATTGATGTCAGTATGGATCTTCATCCCCAGCACTTGATCGGTGATTGCCTTATTCATATTTTTACATTCTTGCCCGAGGAAGATTTAATAAGTGCCTCCTGTGTGTGTAAGGTAAGTGTCCAACTTGCGGAAGTAGCTGTGCAATACAGGAGGATGTGTCTGCAGAGCTGGGGCTTCTGTAACCTTGCTGTTTTGGGGAGTGAACACGGGAATCACTCATGGAAGAGATACTACCTGCGACGTTGCCGTTTAGAGATGAAGATGACGGAAGGGAGGTCAGGAGGTTACACCTGCAAAAGCCTCAGAGGACACACAGGCAAGGTGGTGGGGTTGGTGTACCTGCAGGGGAATTCAGCTCAGCATCCTGACATCTGGAGCAGCAGTGCCACAGTGTGCAGCGCCTCTACTGATGGAACAGTCCGAGCATGGGACATCCAAAATggTGAACTCCTGTGGTGCAGTCCTGTGCAGAGTCCTTTGACAGTGATTGTAAGTGATGAAAAGCAAGACGTTGTGATCACAGCAGACTCCACAGGCCTCATCAAGACCTGGCAGGGTCAGACCGGCCAGGAGTTGGCCTCCTTTACTACTGCATCTCCACACTGTACAATACTACAGTACAATATCAACAACAATTGGTTTCTGACTGTTGGAACCAGTCAGGGATCTGTGTGTACACTAGCTGATCCAGCTTTGACTCAAAAGTCCAGTGTCATGGTGTGTGACACATTTAAAGTCAACACACTCCTAGTTTCACCTGACAAGAAATGGATCACTGCTGGAACCAAGGACAATGATGATTTAAGTCCAAAGGTGATTTACACTGAGAGTTTGAACTCACCGTCTGAGGGCGAAGATCCTCTGTGCCAATCTGTGCCGGTCTCCGGCTGCCAGGCTGCTGTCTTCATACCCACCCAGCCTGCCAGACTGGCCATCATCCACCATAACCAGCGCCCAAACAACAAAGCCCTCACTGTCTTCGATGTCAGCATTAAAAAAACTAAGTACAAGTCAGAGATCCAGGTCCAGCAGGTGGAGTCCTTCCCCTTGACATTGAACACCAGTTCCTCACACATCCTTCTCGAGGCCAAGGACAGCAACTGCTTAGTGTTGGCAGCTGGTCAGGAGCTATGGGTCTACTCTTTGAAAGGAGCCCTGCTTGCTAGCTTTAAAGATCATACTATGCCTATTTCTTCTATATCTGTGGACAGCTTTCGTGTGGTGACAGCATCTCAGGACCTCTCCTTACGAGTGTTGACATGGAGAAATGACAGAGACCAGAGGTTGACCCTGGAGAGCCGATACCACTTACTGGGAGGCTCTCACACAATGTCCAGAGGGTTCACCCATGTTGCTTGTGACTACTCCAGCATCGTGGCCTCAGCAGAAGGGATGGACGGGAAAGATGTCTTAAAAGCGTATTCTTTCACCTCATGAGCGTCGCTGCTCCAAAAAAAGGTGCCTACAAAGAGTGTGCACAACCCTCCAGAAGGAGGACTATTTGCTTTAATTATGAACTTGTcatcatatactgtatgcagaCATTAGGATGGGAAGTCTATGTTTACACAAACCAGAATATAACATTTATTACAGATGAGAAATCCTCCGTTGATACACTGTGTGATAAACGTGCTTGTTAAGAAAAAATAAGTTTGTAAAGGTGTAAGGATAATGTTCATTGACTACACTTTTGGAGCTGAGGTATGTCACTGTTGAATATGACCAGTCTTAAGGCATAATGTTTACTAAATATTCTTTCGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66873 lncRNA upstream 193366 15894025 ~ 15969331 (+) False slc6a1a
TU66874 lncRNA upstream 193366 15965023 ~ 15969331 (+) False slc6a1a
TU66894 lncRNA upstream 211525 15949249 ~ 15951172 (+) True G50077
TU66853 lncRNA upstream 295328 15776217 ~ 15867369 (+) False G50045
TU67072 lncRNA downstream 118961 16285557 ~ 16285759 (+) True G50218
TU67076 lncRNA downstream 138753 16305349 ~ 16311017 (+) False LOC120559121
TU67077 lncRNA downstream 138753 16305349 ~ 16311017 (+) False LOC120559121
TU67086 lncRNA downstream 138753 16305349 ~ 16311017 (+) True LOC120559121
TU67104 lncRNA downstream 198424 16365020 ~ 16379644 (+) False LOC120559119
XM_039801833.1 mRNA upstream 25884 16135340 ~ 16136813 (+) True LOC120559808
XM_039801456.1 mRNA upstream 35621 16103359 ~ 16127076 (+) True LOC120559610
XM_039801457.1 mRNA upstream 35621 16103359 ~ 16127076 (+) False LOC120559610
XM_039801508.1 mRNA upstream 201694 15957583 ~ 15961003 (+) True LOC120559633
XM_039801512.1 mRNA upstream 206023 15952502 ~ 15956674 (+) False cnbpa
XM_039799254.1 mRNA downstream 9981 16176577 ~ 16220258 (+) True LOC120558327
XM_039799256.1 mRNA downstream 9981 16176577 ~ 16220258 (+) False LOC120558327
XM_039799253.1 mRNA downstream 58956 16225552 ~ 16283799 (+) True fgd
XM_039800588.1 mRNA downstream 131335 16297931 ~ 16304967 (+) True LOC120559120
XM_039800592.1 mRNA downstream 137716 16304312 ~ 16310896 (+) False LOC120559121
TU66854 other upstream 295328 15863912 ~ 15867369 (+) False G50045
XR_005639300.1 other upstream 363740 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 1149730 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 1309070 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 1310228 14852396 ~ 14852469 (+) True LOC120559927
TU67106 other downstream 208712 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 208712 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 213448 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 232601 16399197 ~ 16405605 (+) False LOC120559923
XR_005639235.1 other downstream 811302 16977898 ~ 16994701 (+) True eif2d

Expression Profile