RNA id: XM_039801433.1


Basic Information

Item Value
RNA id XM_039801433.1
length 5353
RNA type mRNA
GC content 0.51
exon number 39
gene id cfap74
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29183326 ~ 29245568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCAGCAGGTTTCAGTTGGAAGTCGAGACTCCTCACGGGGCTTCAAGGCCTCGCCCGTGCGTCCCGTCTCCTTGGAAACACTAACAAACATGGCGGATTAATTTTTGTtgtgaggaaaaagaaaaagtcatttTGAGAAGATATCTTGCCAAAAGAGGGGGCGCCTAGACAAGCAAGGTAAAATGGACGTCGAAGACAGGAACAGTCCATGTGACGTGGCGTCAGACAGGTGTGGAGAGCTGGGTGTCCACCTCAgcactgatgatgatgaggacAATGAGGGTGGTCCAGGCCAGATGACCTTTAAAGATGAAGAGGCAGTCCTTTCTCCTGATTTGAAGTGGTTAGAAGACTTGTATGAAGAGGACGATAGTGATATGGATGGCAATGGTGACCTTGCGGTTGCAGCCGTCAATGGTAAGAAGAGGAGTTATGCCGAGACAGCACGGATGTTCAAGCTGAGACGAAACCTGGACCAGCTGGACTGCTTTCACCAACAGAAGGAGCATGACGTGCTGAAAGCCAGAGAAGAGCTTAAACTCTGTCGTCAGAACGTCGAAAGTCTGGTGGAGCAAAGGGATAAGTTGGAGAAAGACATAGAGcgacagagagcagaagacaACAGTGTGGCAGTGTTTCGTTTGCGAGCCCAGCATAAGAATCTGTGTCAAAAGTTGCAGAGTGATGAGGAGCTGGAGGGCCACATCAGCACTAGGCTGAAGCAACAAGAAATGGAGCTGagtgaggtggaggtggagcttGGCAGGTTCTCATCACTCCGGCAGGAggtgcaggaggaggagagggtctTCCAGGTCCTTAAGAACCAGAAGGCAGCAACAAGGCTGCAGCAGGAGAGGAAAGCCAGCCAGAACCTGCAGCTCAAGATGCAGCATCTCAGGGTTAAACAGGCAGCCATGCTGAGGAAAGAGGAGACTGAATGTCAGAAGAAAATCGAAGAAGGACAGGCGAGGCGCAAGATAGCTGCCAAGTACTTGACAGAGACCATTAAAAGGATGCATCAGCGAGAGGCTGAGAAGGAGCAAGAGAACAGGGAGTTACTGGAAAAGAGGATACAGGCTGTCAAGTCACTGAAATCTAACATAGCAGCCACTCAAGAGAGCTTACGGGTCCATCAAAGCAGAGCCAAAGCAAACACCCAGAGGAAAGAGCAGCGACAGAGACAACTGAGAGAATCCCTTCAGGCCCAAGGAATCAACAGTATCAAGCATATGTACCAACAGAAACAACTAGAGGAGTTAAAACGAAAACAAGAGGAATTCGAGGACAGGCAGAAGTTAAAGAGAGTGGAGATTGTGGCAAAAATCATTCAGGAGGAACAGCTGGTaaagaacagaaagaggcaCCAGGCACGGCTGCCTAAACCCACAACCACTGACAAGTTCCCATCTCTGGGGAGAGCAAGAGAGAAGCTCCTGTCCTACCTGGATCCCAGCCCCCCATCAGCCACCGAGGAGAGTGCCACAATTCAGTTAAGACAGTTCAGTGATAGCAGCAGCTCATCGTCAGCTTCCTCTGATGTTGAGGACCTGGGGCAAACCGTGCACCAGGAAGTGGACGACCAGAGCCTTGCTGACAGCCTGGCTGAGCCTGAGTTCtctgggctgtgggaccagaACTACAAGATGCTTTTGAATGAGAAAACAACATTGGTGCAGACAGAAGTAAAGCAGGAAGAACCTGCAGTGGCCAGTGGAAAGCTCAGCATTCCTCCTAAAATGGTTCATGGAAAGGAGCTGAAAGGGCCTCCATTCATCAGTAAACCAGAGGTCATCCTGTTTAAGGACTTTGAAGTGGGGAAGATGTATAAGAAGAAAATCGTCCTGACTAACATCAGCTACATCACCAACCACTGCAAGCTTCTTGGGGTCTCCACACATCTGAAGGATTTTATCTCTATCAACTTTGAGCCTCCTGGTTCTTTATCTACTGGGATGTCTTGTGACATGCAGGCTGTTTTTCAACCTATGATAAACAAGGACCTGGAAGGAGAGGTCCAGTTTGCATCAGCAGTGGGTCCCTTCTCTGTGCCCGTCAGATGCACCATAAAGAGATGTGATCTGGAGGTCGACAGCCAGTTCATTGACTTTGGTTCGCACGTGGTGGGCCAGACTATTTCATGGACTATCACCTTGACCAACAAGGGTGCACTGGCCACCCTCTTCAGCCTGGACACATGTCTCAGTCCAGAAACTAGCCATGTCCAGATGGCATCCCAGAGCTCTGCCATCACCTGCCAGGAGACAAGTACAACATCTGTCGACCAGAGCAGCTCCGTATCCCTGGGCACGGGACAACTCCAACCAAAGCAAGAGAGTCAGGAGCTCTCTGAGGCCTTGCAGCAAGAGCACTCAGagtCAGAGGCTTCAGCTACAGGTCCAGAACCGATTCCTGAGACTTGCGTGTCCCCTGATGTGGATGCCCAAATGGACCAGAGCCACTCAGACTACGATGACATAAGGCTAGGAAATGTTAAAGAGGGGGAGATCGGACCTTTTGAAAGCATTCAACTGGAGGTTGTATTCACTCCAACCATTCCAGGAGAGGCCAAACTAGACTTCCACATCAAATTCTCTGACTTAACCAGCAAACCAATACCCATCCAGGTGAGGGGTGTAGCAGTCAGCGTCCCTGTATGGGTGGTTCAGCCCAGCATTGACCTGAAGATCTGCATGTTTGACCGCCTCTATCAAGACAGTATCATGGTCCAAAGCAGAGCCAGCACAGCCTTGAAGCTGACCTTTGAGGTGTGCCCGGAAATGAGGAAACACATGGAGATCCTTCCAAAGATGGGCTTCATCCAGCCTCAATCAGGCTTTAATGCCCAACTCAAGTTCCTGCCGAGAAGCTCCTTATCCAAAGATGCCAAGAAGCTTTTTGACAAAGATACAGGAGTCCTGGAGGTTCCGTTGACGGTGCAAGTAGCAGGCCAGgtgaagcCGGTTCATTTCACAGTCCAAGCAGTTGTGACCTCCTCAGACCTGCAGTTTGAACCAACTGAGGTGGACTTTGGTATCTGTTCCATTTACCAGTTGGTCAAAAGCAGCGTTCGCCTTACCAACCTGTCCCTGCTGCCTCAGGACTTTGGCTTTTTGGGTGTTCCAGAGTTTATTGAGGTCCAGCCTAATGATGGCTTTGGCACTCTACTCCCACAAGAGACCCTGGAGATTGATCTGATTTTCAGTGCCAACAAGGCCAAAGAGTACAATTTCCAGCTCAGCTGCAGATCAGGAATTAACAGAGATTTCCTTCTGTCTTGCCGAGCAGTGGGTGTCCGCCCTCCACTGGAGCTCTCCCATTCTCTGGTCCAGTTTGGGGCCACGGCAGTGGGAGACCACTCCACTGCCATACTTTACTTGATCAACCATCAAAACAACCATAAGCAGTCCAAACAACCAGTCCCTCCAGTGGTCAAGGGCGCCGTGGCTCCTGTAGCACCCAGGCTGTTCTCCTTCACCCTACCCAAGGATTCAGACATCAGCATCACTCCTTCTGCGGGCGGCCTGCTGCCCGGGGAGAGATGTCTTGTCCAAGTGACGTTCAGACCCAGACTGCTGGACCAGGACATCAGAGAGGAGGCGCTGCGTCTCCTCCACCGAGCCAAGATGCTCCGTGAGAAGGAGTTGGAGAGGAACAGACATGCTGAACAGGAGACTAAAAAGGAGGTCCCAGTGGAAACAGGTAAAGGCAAGAAGGCATCTGTGGTTCCAAAGACTAGCACGGTGTCAGACAGCCCAAACACAGACCAACTAACTGAACCACCAAATCCTGCTGACATACAGCCAGGGTCAGAGCAGTATGAGGAGGCCAGAGCCTCTCTGCTGTACTCCTTCACCCAGCGCTACAGCGAGTACACCGTTCCCTGCTTTGTGTCGGACGGAGACCCTCCAGAGGAAGACCGACAGGCCCAGCCGTCGTGGAGTCCCTTCAATACTCTGTACTTGAAGCTGCAGTGTCCTGCTGTACAGCCCCCTCTAGTGGTCATATCCAACAATGGACAAAATGTCATAGACTTCCATCAGGTGGCAGTGGGAGAAAAAATGATCAAGAGGTTTACAGTTCAGAACATTTCGAAGGAATCTTTGGATCTGAGGTCATCAGTGCTGGATATACGTGGTCCTTTTTTCCTTCTGAATGCTCTCAGGTGCTTAAGACCCGGAGGAAAACAAACTCTGGTTCTGGCCTTCAGTCCATCTCTGGAGAAAAAGTACTGTGAGAGTCTGGAGGTGCGTAGCCAGAAGATGACCCTGGAGATGACTGTGTGTGGGGAGGGTGTGGTCCCTGCTGTCACCTCCTCCCACCCTGGAGGTCTCCTTGACTTTGGCTATGTGTTGGAGAAGGAGAGCACCTCACATGTCCTAAAGCTACAGAACAGCTCAGCGGTGGCAGTGGGTTTCAGGGTGCTGCTGGCCAGCCTTTGTCCCTCACAGCCTCAGGGTGGAGCTGACAGGGTGGCCTTCCTGCTGGGCAGTTACACAGACTCTCAGGTCCAGCCTACTGTGGGAACCCAGAACTACAGTGGGCTGAGTGTGTTCAGTGTGGTGCCAGTAGAGGGCAGCATTGGTCCAGGACAGAGCCAGGACATCACTGTCACCTTTCAGCCTGACCACCCGGCTGTCAACTATTCTGACAGACTGACCATAGAGCTCACAAATAAGAGTAAAGTGTGTGTGGTGGATCTGAGGGGGGCAGCTTCTTCACATAACATGTATCTATTTGGAGGAGACCGGCTGACTGTGCCGATTGaatctctcctccctccactgATAACCGGTCAACCTCCGCTTACAGCAGAGTCAGAGGTGATGGAGAAGCCCACCATCCCTGTGCTGGTGACCCTGCGGGCCAGCTACAGCGCAGGAGTCGTCACACCTGCAGTGAGGGAGCTGCAGGTGGGCTgcatcagctccacacagccCAGTAAGAAGAGTGGTGAGTTTTACTGGGATAGCGCTGCATCTCTGCAGCAGCACGGCTTCAGTGTGGAGCCCACCAAGGGCACTGTGGAGACAGGCCACAGACGCACCCTCACTGTCACGTGGACACCCCACTGTGGATACAAAcccTATGAGGTGGTGCAGACATGTGTTCCTCTTACCTTGAAGGGGGATGAGACGAATGTTTACAGAGTCACCCTGTTGGCTTTGGTCTCCACCACTACTGACTGACATCTACAGTACCTGGATTCCGGCCAGTGTGAaagctgctcacacacacactggcacaaTCCATACAGACATGTGACACACCGTGCATTTATGTGGCCAACATTAATACATGAATTGGTTATttctgaattgaattgaattattaaAGGTGCAATTAATTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72020 lncRNA upstream 76609 29105794 ~ 29106722 (+) True G53897
TU72008 lncRNA upstream 212986 28964636 ~ 28970345 (+) True G53885
TU72007 lncRNA upstream 227515 28955560 ~ 28955816 (+) True G53884
TU71885 lncRNA upstream 680418 28500587 ~ 28502913 (+) True G53782
XR_005639178.1 lncRNA upstream 729056 28446511 ~ 28454275 (+) True LOC120558758
TU72070 lncRNA downstream 64976 29310544 ~ 29314747 (+) False nadka
TU72083 lncRNA downstream 102966 29348534 ~ 29349109 (+) True G53948
TU72096 lncRNA downstream 127241 29372809 ~ 29373489 (+) True G53956
TU72100 lncRNA downstream 137184 29382752 ~ 29383131 (+) True G53960
TU72102 lncRNA downstream 138382 29383950 ~ 29384191 (+) True G53962
XM_039800113.1 mRNA upstream 485422 28512047 ~ 28697909 (+) False nphp4
XM_039800114.1 mRNA upstream 485422 28518942 ~ 28697909 (+) False nphp4
XM_039800117.1 mRNA upstream 485422 28518949 ~ 28697909 (+) False nphp4
XM_039800115.1 mRNA upstream 485422 28518949 ~ 28697909 (+) True nphp4
XM_039800112.1 mRNA upstream 674791 28504486 ~ 28508540 (+) False c5h1orf174
XM_039801437.1 mRNA downstream 5406 29250974 ~ 29294158 (+) True gnb1a
XM_039801436.1 mRNA downstream 32757 29278325 ~ 29294158 (+) False gnb1a
XM_039801439.1 mRNA downstream 32774 29278342 ~ 29294158 (+) False gnb1a
XM_039801438.1 mRNA downstream 33341 29278909 ~ 29294158 (+) False gnb1a
XM_039801440.1 mRNA downstream 33643 29279211 ~ 29294158 (+) False gnb1a
TU71867 other upstream 837415 28341922 ~ 28345916 (+) True G53775
XR_005639289.1 other upstream 860552 28319650 ~ 28322779 (+) False casp9
TU71748 other upstream 1191621 27954417 ~ 27991710 (+) False bsna
unassigned_transcript_233 other upstream 1390767 27792492 ~ 27792564 (+) True trnar-ccu_2
unassigned_transcript_232 other upstream 1419894 27763365 ~ 27763437 (+) True trnar-ccu_1
TU72069 other downstream 51036 29296604 ~ 29314747 (+) False nadka
TU72074 other downstream 70315 29315883 ~ 29323204 (+) False nadka
TU72220 other downstream 314545 29560113 ~ 29567773 (+) False ano11
TU72298 other downstream 506878 29752446 ~ 29758010 (+) True G54103
TU72299 other downstream 506878 29752446 ~ 29754247 (+) False G54103

Expression Profile