RNA id: XM_039801439.1


Basic Information

Item Value
RNA id XM_039801439.1
length 3436
RNA type mRNA
GC content 0.42
exon number 11
gene id gnb1a
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 29250974 ~ 29294158 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCAATCAGGTGACAGGTAGCTACTGGGATGTCAGGCGCTTTAAGGATAAGGTGTTCATTCAGAAGGTCTCAACCCTCCTAGAGGACCTATATCGAAACAGGGAGGTAAGATCAGCAAGAGTCTAGGCGGCGGAGCGAAGCACACCATTAGCAGAGGAAAATGAGTGAACTGGATCAGCTACGCCAGGAGGCTGAGCAGCTCAAGAACCAGATCAGAGATGCCAGGAAAGCGTGTGCGGATGCTACCCTGTCTCAGATCACAGCTAACATCGACCCTGTTGGCCGAATTCAGATGCGCACTAGACGGACACTGAGGGGACATCTGGCTAAAATCTATGCCATGCACTGGGGCACTGACTCGAGGCTTTTGGTCAGCGCCTCCCAGGACGGCAAACTCATCATTTGGGACAGCTACACCACAAACAAGGTCCACGCCATCCCGTTGCGCTCCTCCTGGGTGATGACATGCGCCTATGCCCCCTCTGGGAACTACGTTGCCTGTGGAGGCCTGGACAACATCTGCTCCATCTACAACCTGAAGACCCGTGAGGGAAATGTGCGTGTCAGCCGTGAGCTGGCCGGACACACAGGTTACCTCTCCTGCTGTCGCTTCCTGGATGACAACCAGATTGTCACCAGCTCTGGAGACACCACCTGTGCTCTGTGGGACATTGAGACTGGTCAGCAGACAACTACATTTGCTGGTCACACCGGTGATGTCATGAGTCTCTCTCTGGCGCCCGACACCAGGCTGTTTGTGTCTGGAGCCTGCGATGCCTCGGCCAAGCTCTGGGACATCAGAGAAGGAATGTGCCGACAGACCTTTACTGGCCACGAGTCGGACATCAACGCTATCTGCTTCTTCCCCAATGGCAACGCATTTGCCACGGGTTCAGACGACGCTACCTGCCGGCTGTTTGACCTGCGTGCTGACCAGGAGCTGATGGTTTACTCGCATGACAACATCATCTGTGGTATCACCTCCGTGGCATTCTCCAAGAGTGGCCGCCTACTGCTGGCCGGCTACGACGATTTCAACTGCAATGTCTGGGACACTTTGAAGGCCGACCGTGCAGGTGTCCTGGCTGGTCACGATAACCGGGTGAGCTGCTTGGGTGTGACCGACGACGGCATGGCAGTGGCAACAGGGTCCTGGGACAGCTTCCTCAAGATCTGGAACTAGAGTCTCGAGATGGCATCTGAGTGGAAGACCATTCCAACATCACAATGTTCAATTTTATTGCATATCCAATCTTTTCAAAAACACCACGAAACTGACTCcaaacacccaaaaaaaaaaaaactatcaagGGCaaaaattctctctctctctcttctcttctcattTAAAAGAGCACAATTGTCTGTCAATCattcagctacaaaaaaaaaaagaaggaaaaaaaaataaagctcgAGGAATTTAGTGGTTTCAAAATGGAACGGAGGGGAAAGTTGTGCATTCCTCCCATGACCATGGTCTGGTATTGTAATAAGTCAAATGCAAACACCCCACAGCTGCCGCTGCCGCCACCACCACCAAGCAAACTTGTCCTGCGTCCTCATAATACACAGGTCTGAGTGAAGGTTATAACACGACAGTGATCTAGCTTTTTGGCCATGTTTcttttggtttctttttttggtttcattctttttttgttaaagagaaGTAGATCAGTGAACTGTCAGTTAATGTTTAAAATGAGGATCAAAGCTTTTGTTTCATTTCCTAGTCTTTTCACATTTTAGAGAATGTTTTTAAGTTGAAAACTAGAAGAATCTCCAGATCTCATGTCATTTTAAATCCAGCTTTATCGCACTGGAGAACAAAGCGAGAGAATTGAGCTTCAACAGGGAGTCCTCAAGCCACTTCTGGCCCTTCTGTATATTTAGTCCCATGATACTTTTACTGTTTCTTTTTTCCAGTGTAGTCCACAAATCTTTGTTTGCACAAAAATTAAACTTTGCATATATAGAATAATgtctaaagaagaaaaaaagtgaactAACCAAGCACATGCTGTTTATGATAATGAATGCTCGTTTTGAAAACGAAAAAAccaccacaaaaaaacaaccattttAACCATTCTTACACCTTTTTTGTCTGCAGACAGTGTAGAATAATTAAATGAAGATTAACCCATCAGATCATAATCCACCCtgcccctctttttttttatagtttttttttttctctccttttaatttagttttttttttttttcccggtTTCTGTTGCCCGTGGTTGGGACCGGTGATGTGATTTGGTCGGGTAGGGAGTATCTCCACTTTAGCCCGGTTGCAATCCGGACGTTTCTCTTTTAACAGAGGTGCCCATTCCGTGCTTGGAAATGCAGTTACTACTCTGTGAATGACATGTTGTAAAAATCAATGTttgaaaataatgatattgaaactttttaagttaaaaacgaaaaaaaaaaaggattttggtTGTCTGCCATGGGTGGGTTATCTCTTAGAATCGCATGCTGTAGAATTGCTTAAAAAGGTGCATATGGAATTAAGTCCtttgatgtttttctttaagaaaaTAACCTGTTGAATATATCAATACAAtggtatttatatttttcttttctttttcttcttttttttccttttttgtttttggctaCTCCGTGCATACATGATTTAACTAAAATGTCAAAGCTATGCACAACCCTGCAACATAAACTGTTACTTGGTCCATACTTGGGAGGGATTCCACAAATTAAGAAGTAACGTAAATGTTTAAAttgtacacacatgcatacgtACATTCATTCACCTAAACATACACAATCTCAAATGGAACAAATAAATTGTCATTCCTTCTGTAGCAAACAAAATTCCACttacaaagaaaaacattttataacaggtttttttctgtcctttaataaaaaatgaaaaaaaaaatcttgcagCATTTGAATGGCAGAATTTTCTGTTGTTCCCTTCTCCTTGTAAACAGAGACGCTCTTTCTTTAGCAGTAGTGACAtttttttccattgttttttCTCTGCGACATTCTGTACAAAAATGTGCTGTAATTGTGCGTTAGGCCTGGAGttggcaaaaaataaaatgaaaataaaaaatataaaaaaattaattaaattccctttccttttctctctttctccatcaaaTAACTGTAGAGCTCTGCACCCCCACTGTTCCCTTTTCAccttttgtatttaattttaaaGTCAGTCAGTGTACAACCGAAAGCTGGATGCAAGATAGAAactatattaaaatgtactGTTATTTAAGATGTAATAAAAAGCAGTTTGAGATGACCTACTGTGTTGAGTGTGATTCACTTAGAGCAGTTACCACTGAAGCTAGAATGTTGCAGACTGTTTggtttccttgtaattatgttcaAGTCAAATAAACAATTTCTTATCCACTGTTGAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005515 protein binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU72020 lncRNA upstream 171620 29105794 ~ 29106722 (+) True G53897
TU72008 lncRNA upstream 307997 28964636 ~ 28970345 (+) True G53885
TU72007 lncRNA upstream 322526 28955560 ~ 28955816 (+) True G53884
TU71885 lncRNA upstream 775429 28500587 ~ 28502913 (+) True G53782
XR_005639178.1 lncRNA upstream 824067 28446511 ~ 28454275 (+) True LOC120558758
TU72070 lncRNA downstream 16386 29310544 ~ 29314747 (+) False nadka
TU72083 lncRNA downstream 54376 29348534 ~ 29349109 (+) True G53948
TU72096 lncRNA downstream 78651 29372809 ~ 29373489 (+) True G53956
TU72100 lncRNA downstream 88594 29382752 ~ 29383131 (+) True G53960
TU72102 lncRNA downstream 89792 29383950 ~ 29384191 (+) True G53962
XM_039801434.1 mRNA upstream 32774 29183331 ~ 29245568 (+) False cfap74
XM_039801433.1 mRNA upstream 32774 29183331 ~ 29245568 (+) False cfap74
XM_039801431.1 mRNA upstream 32774 29183332 ~ 29245568 (+) True cfap74
XM_039801432.1 mRNA upstream 32774 29183332 ~ 29245568 (+) False cfap74
XM_039801435.1 mRNA upstream 38455 29183326 ~ 29239887 (+) False cfap74
XM_039800453.1 mRNA downstream 2447 29296605 ~ 29323242 (+) True nadka
XM_039801694.1 mRNA downstream 45548 29339706 ~ 29348037 (+) True LOC120559728
XM_039799349.1 mRNA downstream 66840 29360998 ~ 29364410 (+) True mad2l2
XM_039799348.1 mRNA downstream 74297 29368455 ~ 29372181 (+) True tmem82
XM_039799346.1 mRNA downstream 80816 29374974 ~ 29401377 (+) True spen
TU71867 other upstream 932426 28341922 ~ 28345916 (+) True G53775
XR_005639289.1 other upstream 955563 28319650 ~ 28322779 (+) False casp9
TU71748 other upstream 1286632 27954417 ~ 27991710 (+) False bsna
unassigned_transcript_233 other upstream 1485778 27792492 ~ 27792564 (+) True trnar-ccu_2
unassigned_transcript_232 other upstream 1514905 27763365 ~ 27763437 (+) True trnar-ccu_1
TU72069 other downstream 2446 29296604 ~ 29314747 (+) False nadka
TU72074 other downstream 21725 29315883 ~ 29323204 (+) False nadka
TU72220 other downstream 265955 29560113 ~ 29567773 (+) False ano11
TU72298 other downstream 458288 29752446 ~ 29758010 (+) True G54103
TU72299 other downstream 458288 29752446 ~ 29754247 (+) False G54103

Expression Profile