RNA id: XM_039801462.1


Basic Information

Item Value
RNA id XM_039801462.1
length 1588
RNA type mRNA
GC content 0.47
exon number 1
gene id LOC120559617
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16818839 ~ 16820426 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACCTAGGGTACATTTGTAGCAGGGTCCGTCTCCATCACTTTCCAGAACAGCCAGAAGAAACGATACAGAAGGGCTGATTGCAACAGCAAGCCGCAACCATGAACGGCACAGAGGGACCATATTTCTATGTCCCTATGGTAAACACCACGGGCGTTGTCCGGAGTCCTTATGAATACCCTCAGTACTACCTTGTCAACCCAGCAGCTTACGCTGCCCTGGGTCTCTACATGTTCCTGCTCATCATTCTTGGCTTCCCTATCAACTTCCTCACTCTGTACGTCACCATCGAACACAAGAAGCTGCGAACCCCTCTAAACTACATCCTGTTGAACCTTGCGGTGGCTGACCTCTTCATGGTGTTTGGAGGATTCACTACGACATTGTACACCTCTTTGCACGGCTACTTCGTCCTAGGACGCCTTGGTTGCAATCTGGAAGGATTCTTTGCTACATTCGGTGGTATAATTGCCCTCTGGTCACTGGTTGTTCTGGCTGTTGAAAGGTGGGTGGTTGTCTGCAAGCCCATCAGCAACTTCCGCTTTGGGGAGAACCACGCAGTGATGGGTGTGGCCTTCACCTGGGTGATGGCCTTAGCTTGTGCTGGGCCCCCGCTAATTGGCTGGTCTCGTTACATCCCTGAGGGCATGCAGTGCTCATGTGGGGTGGACTACTACACACGTGCAGAAGGCTTTAATAATGAGTCCTTTGTGATCTACATGTTTCTCTGTCACTTCATCATTCCAATGACTGTCGTTTTCTTCTGCTACGGCCGTCTGCTCTGTGCTGTCAAGGAGGCGGCTGCTGCCCAGCAGGAGTCTGAGACCACCCAGAGGGCTGAGAAGGAAGTCTCCCGCATGGTAGTGATGATGGTCGTCTCCTACCTGGTGTGTTGGGTACCCTATGCCAGTGTGGCCTGGTTCATCTTTACAAATCAGGGCTCTGAGTTTGGACCACTCTTCATGACCCTCCCGGCCTTCTTTGCCAAGACTGCAGCAGTCTACAACCCAGTGATCTACATTTGCATGAACAAGCAGTTCCGCCACTGCATGATCACCACCTTGTGCTGCGGGAAGAATCCctttgaggaggaggagggagcatCCTCTACGAAGACCGAGGCCTCATCTGTCTCCACCAGCTCTGTGTCTCCTGCATAAAAGAGCTGTCAACACAAGCTCCATGATCCACTATCCAAGAAGAAGACTTCTGCTCCCCCCGGGAAACGACTGAAGACTAATGTCTACAGAAAGAATTTCCTTTTGTATTTTTACAAACATGTTGGTTCAACCTAAAGACAGTTGCAGGAAAGGTCAGCCCATTACAGAGTTGTTCCTGTTTGTACAGAATATCCAACTTAAAATTTATGAGATTTTTCTTTCTgagaataaaggaaaaaaatgtaatcttttaCAGTTGGATCCTATATAATACTGGCTTATTTTTGAATGTAGAGGCATATAAACAAGGCAACGTAAAATAAAACGCACTTTGCAAATGACTCATCCGTTTCTTTTACTCATAATTTGGGTGGCAAAGTTCAAATACCTGTAGTATATTTAttgaaattaataaatgtaaacaaCCTA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639303.1 lncRNA upstream 135305 16680581 ~ 16683534 (+) False LOC120559512
XR_005639304.1 lncRNA upstream 135305 16680581 ~ 16683534 (+) False LOC120559512
XR_005639302.1 lncRNA upstream 135305 16680586 ~ 16683534 (+) True LOC120559512
TU67237 lncRNA upstream 192621 16605965 ~ 16626218 (+) True G50326
TU67228 lncRNA upstream 237846 16580059 ~ 16580993 (+) True G50320
TU67374 lncRNA downstream 6454 16826880 ~ 16829880 (+) True G50410
TU67495 lncRNA downstream 278196 17098622 ~ 17104964 (+) True G50493
TU67525 lncRNA downstream 314262 17134688 ~ 17135490 (+) True G50505
TU67530 lncRNA downstream 330756 17151182 ~ 17151913 (+) True G50509
TU67540 lncRNA downstream 342753 17163179 ~ 17163665 (+) True G50518
XM_039801780.1 mRNA upstream 78140 16732994 ~ 16740699 (+) False LOC120559776
XM_039801779.1 mRNA upstream 78140 16733000 ~ 16740699 (+) True LOC120559776
XM_039801199.1 mRNA upstream 92600 16719172 ~ 16726239 (+) True LOC120559487
XM_039801200.1 mRNA upstream 92600 16719172 ~ 16726239 (+) False LOC120559487
XM_039801226.1 mRNA upstream 100651 16709978 ~ 16718188 (+) True qars1
XM_039801159.1 mRNA downstream 114451 16934877 ~ 16940282 (+) True ren
XM_039800863.1 mRNA downstream 126735 16947161 ~ 16954280 (+) True csf1b
XM_039800865.1 mRNA downstream 126735 16947161 ~ 16954280 (+) False csf1b
XM_039800867.1 mRNA downstream 126762 16947188 ~ 16954279 (+) False csf1b
XM_039800866.1 mRNA downstream 126763 16947189 ~ 16954279 (+) False csf1b
TU67161 other upstream 413234 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 424607 16380044 ~ 16394232 (+) False brpf1
TU67106 other upstream 439195 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other upstream 441350 16375308 ~ 16377489 (+) False LOC120559119
TU66854 other upstream 951470 15863912 ~ 15867369 (+) False G50045
XR_005639235.1 other downstream 157472 16977898 ~ 16994701 (+) True eif2d
TU67547 other downstream 365485 17185911 ~ 17197173 (+) True G50523
TU67812 other downstream 921034 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 1861717 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 1909054 18729480 ~ 18729551 (+) True trnaa-ugc_5

Expression Profile