RNA id: XM_039801506.1


Basic Information

Item Value
RNA id XM_039801506.1
length 3828
RNA type mRNA
GC content 0.43
exon number 12
gene id syn2a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15922374 ~ 15934225 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGCACTTACACTGGATAGCCCTGTATTTTAAATGCTGTGGTTCAAAAAAGCATGACGCCTGTGAGGCAGTAGAAAATGGGGGAGGGGTAAGGCACACCAGTGAGAGAGTGGAGAGATGAGAGaacaagaggaggaaggagaggcacGGCCGGAGCATCATTTGCAATGGTTGAGGAAAGCACAGGGTAAGGGGATTGGTTGAGGGAGAGTGTAGCGTCACCAACACTGAGGGGGAGCTCTGAGGATGCTCCACTGAACTGGGAGGGAATACGTTCGCTctgcagccatgaatTATTTGCGTCGGCGTCTCTCGGACAGCACGTTCATCTCCAACCTGCCCAATGGCTACATGACAGACCTCCAGAGGCCTGACAATGCTCAGCCTCCGCCACCTGGCTCCACCACCCCTGCCAAGTCCCCTACAACTGGGCCTACACCTCCAGCCACTTCCCCGGCTCCAGAGAGGAAACCCCAGCCATCTCAGTCCAGCGGAGCAGGCTTCTTTAGCTCCATCACCAACGCTGTTAAACAGACAGCTGCCTCAGCAGGGCTGGTGGAGCAGACCCAAGTCACGACACCTAAGAAGTTCAAGATTCTCTTGGTAATTGATGAACCACAACAGGAGTGGGCAAAATTATTCCGGGGAAAGAAACTACATGGGGATTATGACATCAAAGTGGAGCAGGCGGAATTCAATGAGATCAATGTTGTGGCTCATGCCAACAGGACTTGCAACGTTAACATGCAAGTTCTCAGAAATGGTACCAAGGTTATgagGTCATTCAAGCCAGACTTTGTCCTCATTCGTCAACATGCCTTCAGTATGACCCAGAATGAAGATTTCCGCAACCTGGTCATTGGTCTGCAGTATGGAGGTGTCCAATGCATCAACTCACTCGAGTCCATCTACAACCTGTGTGACAAGCCATGGGCGTTTGCCCAACTTATCAACACCCACAGGAAGCTTGGTTCGGAGAAGTTCCCTCTGATTGAGCAGACCTTTTACCCAAACTACAAGGAGATGGTAAGCATGCCATCATTCCCTGTCGTTGTGAAGATTGGACATGCCCACTCCGGTATTGGAAAGGTGAAGGTGGACAATCACAGTAAGTTCCAGGACATAGCCAGTGTTGTGGCTCTCACCCAGACGTACACCACCACAGAACCTCTCATTGACTCCAAGTACGACATAAGAATCCAGAAGATTGGCACTGACTACAAAGCCTACATGAGAACGTCTATATCTGGTAACTGGAAGACTAATACTGGCTCAGCTATGCTCGAACAGGTGGCCATGACTGATAGGTACAAGCTATGGGTTGACACCAGCTCAGAGATTTTCGGGGGCCTGGATATTTGCGCAGTCAAAGCTATCCATGGGAAAGATGGCAGAGATTTTATCACAGAGGTGGTGGGCTCCTCCATGCCCCTGGTCGGGGAGCACCAGGCCGAGGACAGGCAGCTCATCGCTGACATGGTGTTGGCAGCAATGAACCAGTCAGCAGAGAAGGAAGCTAATGCTCCCCAGAGACCCACTACCATACAGCCATCCCAGGGAGCTGGCCAGAAGGGAGAGATTGTTGGTGAACCCACTAAGAACGGTGCTGGGAACCCGCCTCAAGGTTGTCTGCAGTACATTCTCGACTGTAATGGCGTTGCAGTGGGTCCAAAACCAGTCCAGGCCAACTGAGTCACCAAGGAGAAAAGTGGGGGAAGTCTAGATAACAACGACGAAACTTAGCCGAACACAAGcacagacgtgtgtgtgtgtggatgctaATAGCTAGAATCAGATCTGGGTGACGTGAGCTCGGTACAGCTGAGTGCTGGTCTGGACTGTGTTTTTAACTCTATGCAGTGTCAAAATGTACTGTCTACTTGTTGACCTGTTGATTTGTGTGCTTGTATAGGTCACCTATGTTTCAGTAgctgtggtgttttctttgggGCTGTTGTTGATGATGTAAAAAGCAGATTGTGCCTACACTGAGTTCAGTGCTGCTCTGTGCTATCCGTTTAACCCGGGCTATATATCATTTGTTTGCCCCCCTACCCCTACCCCCTTTTCTGTTTTCTATTTTGGTGTGCACCTTTAAATATCGTTCAAACTGATGACTATGGTGCAGTTTGAAGTTTGTGTAAAGTTCaatatgtatacagtatgtgagtgtgtgtatggatgtaGTGGTGATTATTTTTCATACGTATACTAatagatatttatttttgttttgcatgATTGATACAAAGTACGGCGCAGTCAGTTAATAATGTCTGATCAAGTGAGATGTTCATGTAACATCGCTGTGTTCCCCAAGCTGTGTTCCCCAAGCTGTGTTCCCCAAGCTGTGTTCCTATGATTCATGCATTGTGAATGTGTCATATACTGTAGAAATGCATATTATAGAAGTTCTACAGGATACATGTATTAATTACCAAACATTCATTAACACAGTGTGCATACACGTACAAtagagacatacagtatgtggccTTTCTTAGAGTTAATTTTTTCATCTATATTGTCACAATGTCACCATGGAGAAGTAAAGGGATTTAAGAATATTAATAGATGGAcacataataaatataaaaaaaaattattaaagatTTTATCATGTAAGTTGTGTCTGCACACACaacttaaatatatttatatcatTTTGAACCAAAGAATAAATGATTTACTTTTTAATCAGTCTTTGCACTCCAGTAACCCACAATGTAAATATCAGTAAGGGGACTGTTAAGACTGCAGTATGTCACATGGAGTGTATAATTTCACCAGAGAACAATGTTCTGAGACAATATTTATGTTCTCAAATATGCTGTTGTAATTCACACGCCGGTGTGAGCTGATGCTGTATTCaaattgttgtctttttgcgTTTGGTTGTGTGGAGGCAGACATTACAGCTGATAATAAAAAGGTGTATAATGTATGATCTGCCATGTAATGACAGATATAATGCCCTCCCCTATGACCCTCACACTGGATATTGGCTATCATGGTGGTGTTGCCATGACAACAATGCAAGAGCTCTGAGGTTTTAGTGTGCTCGTGTTACTGCCATTCAAAGATTCAATACTTGTCCTGTGAGTTGATGGAAAGTGCAATATAGATCTTAGTTTTTTACTCAataatttaatgtatttattttgaaatcagaTCTTAAGTATAGTCATCCACACACTGAattgttttaaaacatttttacacaaaTCACTTGGTTGTTGTCCAGTGGCTTTTGTGGAGGCCATTTCATATATCTAATACCCTAAATGGTGAAACAGCTAAAAAGCAACCAAATCaactgtaaaaagaaatctgtaCCGTTttccaaaagtaaaaaaagtatgtTACTACTATAAAATATGTTCAGCAAGCTCTGTGTGCAATTCTTTTCCAAGTTGTATAAAGTGCCATTGTATCTGTGAGCGTATCCTTGTAAAAGCCATGCCTGAGGCTTTATGGGTGTGATGTTCTGTTTAATAGGAAATATGCCATGGCATTGATTTTTAAGGGAGGAACATGCAGAGGTACCCCAGCTGCATGGTAGACCTTGGTTCAGTGATCGTGATTGAATATTTGATCAATTATAACTGGACGTGTTTATTTGCCCATTGTGTTGAGGTGAAACTTGTATATTCAGACCTGCAGGACTGTAACTATTAAGGGCCATAGTAACTTGCTAAATATATGTACTTTCAAAACCGGTGTTGGACTGTTTAAAATCAAGTTCAGAATACAATATATTGTGGAAAAAACGTCCTTTCTGGATATTTCCTCTCTGTCACTGGCAATAAAGCTTCCTTTGCAATATA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007269 neurotransmitter secretion biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0005524 ATP binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K19941 SYN; synapsin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66853 lncRNA upstream 55005 15776217 ~ 15867369 (+) False G50045
TU66852 lncRNA upstream 55005 15862808 ~ 15867369 (+) True G50045
TU66832 lncRNA upstream 216906 15705096 ~ 15705468 (+) True G50029
TU66817 lncRNA upstream 252830 15667249 ~ 15669544 (+) True G50017
TU66894 lncRNA downstream 15951 15949249 ~ 15951172 (+) True G50077
TU66874 lncRNA downstream 31725 15965023 ~ 15969331 (+) False slc6a1a
TU67072 lncRNA downstream 352259 16285557 ~ 16285759 (+) True G50218
TU67076 lncRNA downstream 372051 16305349 ~ 16311017 (+) False LOC120559121
TU67077 lncRNA downstream 372051 16305349 ~ 16311017 (+) False LOC120559121
XM_039801455.1 mRNA upstream 26549 15885990 ~ 15895825 (+) True slc6a1a
XM_039801853.1 mRNA upstream 67331 15850652 ~ 15855043 (+) True LOC120559823
XM_039799422.1 mRNA upstream 74579 15841943 ~ 15847795 (+) False LOC120558427
XM_039799421.1 mRNA upstream 74579 15842747 ~ 15847795 (+) True LOC120558427
XM_039799423.1 mRNA upstream 74579 15842931 ~ 15847795 (+) False LOC120558427
XM_039801510.1 mRNA downstream 19204 15952502 ~ 15956674 (+) False cnbpa
XM_039801513.1 mRNA downstream 19204 15952502 ~ 15956674 (+) False cnbpa
XM_039801512.1 mRNA downstream 19204 15952502 ~ 15956674 (+) False cnbpa
XM_039801511.1 mRNA downstream 19223 15952521 ~ 15956674 (+) True cnbpa
XM_039801508.1 mRNA downstream 24285 15957583 ~ 15961003 (+) True LOC120559633
TU66854 other upstream 55005 15863912 ~ 15867369 (+) False G50045
XR_005639300.1 other upstream 123417 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 909407 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 1068747 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 1069905 14852396 ~ 14852469 (+) True LOC120559927
TU67106 other downstream 442010 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 442010 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 446746 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 465899 16399197 ~ 16405605 (+) False LOC120559923
XR_005639235.1 other downstream 1044600 16977898 ~ 16994701 (+) True eif2d

Expression Profile