RNA id: XM_039801510.1


Basic Information

Item Value
RNA id XM_039801510.1
length 1496
RNA type mRNA
GC content 0.44
exon number 5
gene id cnbpa
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15952502 ~ 15956674 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACCAATGACTATGCAGGTTTTTACTGGATACTGTGAATGGCAATTCAGGAACTCCCGTTCATCACACCGCATGTAGCGCAAAGAAGGAGGCGTAAACACTGACAGAGCTAGGTAGCCAGCGAGAGAATGGAAATGAGCAGTAGCAGCGAGTGCTTTGGATGTGGCCGCTCTGGGCATTGGGTCAAGCATTGCCCAAGCGCACGTGGTGGAGGTGGACGCGGCAGGGGTCGGGGACGAGGCAAGGAGCTGTTCTGTTATCGGTGTGGAGACCAAGGACACATGGCCAGGGACTGTGACCAAACTGAGGATGcATGCTACAACTGCCACAGGAGTGGCCACATTTCCCGGGACTGCAAGGAGCCCAAAAAGGAGAGGGAGCAGCTCTGCTACACCTGCGGCAAAGCTGGCCACATGGCCCGTGACTGTGATCATGCCAACGAGCAGAAGTGCTACTCCTGCGGTGGGTTTGGCCACATCCAGAAACTTTGCGATAAGGTGAAATGTTACAGGTGTGGCGATATTGGCCACGTTGCTGTGCATTGCAGTAAAGCCAGCGAGACTAACTGCTACAACTGCGGAAAGGCGGGCCACCTGGCAAAAGATTGCACCATTGAAGGCAGTGCATAATCAGTGCCCTCTGTTGCCCCTCCTTTTTTCAGATTGATGGttggttgtattattttctcTGAATCCTCTTCACTGGCCAAAGGTTGGCTAACGGAGGCTAGTCCCAGGCCAGTGAGCCTCTCGACATGTAATACAATGAAAggggtgaaaaaaaatctttctgcattcaatacaaaaatgttttagtttgGTAGCGGTGTTATGTATAATGCTTTGTTAAAGAACCCCCCTTTCCAAGCCACTGGTGATCAGAGATGAATAAATGGGACTAAATATGGGAATCTATAGGACCTCTGAGCTTGTGGAAGAGAGCCTCAGTAAAATGAGATAGAAGAAGGGAGTAAATGGAAACCAAACTTCCATGTATGgttattttggtttgttttagtGGGATATGAGTTGGCCAAGAGAGTATGACATGGAAACAGTTCATAACATGATGCATTTCAGCCCTACAAGCAGCTAAAAGGGCGATAACAAACCACATGTTATATTGCTACGATATAAACATTTTGGAGGTATTAAAAGAAACGCGTTCTTTTATAGAaatctgtttacaatttaaatatCACTTGGTAGTCCAAGGtagactttttcttttaaaatggctttggaatttttgtttttttaccttgGCAAAATTTAACATCAAGAGCAGTTGTCAGCAGAATTAGGAGTTATTTGGGaatgaaaaaatgttttcacagaaatcaaaatgttatttttgtacAATATCACTTAGActactgtataaataccatTTGCTTGTACTCAGTTTTTAAGTCGGAAGGAAAGTGCAACTGAAGTCCTAGAAAAtagaaatgtaattttaaactaTCAATAAAGCTGGAGGAGCACGGGGAGGA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66894 lncRNA upstream 1330 15949249 ~ 15951172 (+) True G50077
TU66853 lncRNA upstream 85133 15776217 ~ 15867369 (+) False G50045
TU66852 lncRNA upstream 85133 15862808 ~ 15867369 (+) True G50045
TU66832 lncRNA upstream 247034 15705096 ~ 15705468 (+) True G50029
TU66817 lncRNA upstream 282958 15667249 ~ 15669544 (+) True G50017
TU66874 lncRNA downstream 8349 15965023 ~ 15969331 (+) False slc6a1a
TU67072 lncRNA downstream 328883 16285557 ~ 16285759 (+) True G50218
TU67076 lncRNA downstream 348675 16305349 ~ 16311017 (+) False LOC120559121
TU67077 lncRNA downstream 348675 16305349 ~ 16311017 (+) False LOC120559121
TU67086 lncRNA downstream 348675 16305349 ~ 16311017 (+) True LOC120559121
XM_039801507.1 mRNA upstream 18277 15922661 ~ 15934225 (+) False syn2a
XM_039801506.1 mRNA upstream 19204 15922374 ~ 15933298 (+) True syn2a
XM_039801455.1 mRNA upstream 56677 15885990 ~ 15895825 (+) True slc6a1a
XM_039801853.1 mRNA upstream 97459 15850652 ~ 15855043 (+) True LOC120559823
XM_039799422.1 mRNA upstream 104707 15841943 ~ 15847795 (+) False LOC120558427
XM_039801508.1 mRNA downstream 909 15957583 ~ 15961003 (+) True LOC120559633
XM_039801456.1 mRNA downstream 146685 16103359 ~ 16127076 (+) True LOC120559610
XM_039801457.1 mRNA downstream 146685 16103359 ~ 16127076 (+) False LOC120559610
XM_039801833.1 mRNA downstream 178666 16135340 ~ 16136813 (+) True LOC120559808
XM_039801420.1 mRNA downstream 206023 16162697 ~ 16166596 (+) False fbxw12
TU66854 other upstream 85133 15863912 ~ 15867369 (+) False G50045
XR_005639300.1 other upstream 153545 15772217 ~ 15798957 (+) False zmp:0000000926
unassigned_transcript_225 other upstream 939535 15012895 ~ 15012967 (+) True trnak-cuu
XR_005639381.1 other upstream 1098875 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 1100033 14852396 ~ 14852469 (+) True LOC120559927
TU67106 other downstream 418634 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 418634 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 423370 16380044 ~ 16394232 (+) False brpf1
TU67161 other downstream 442523 16399197 ~ 16405605 (+) False LOC120559923
XR_005639235.1 other downstream 1021224 16977898 ~ 16994701 (+) True eif2d

Expression Profile