RNA id: XM_039801599.1


Basic Information

Item Value
RNA id XM_039801599.1
length 4148
RNA type mRNA
GC content 0.45
exon number 13
gene id slc17a9b
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17576722 ~ 17587580 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACGATTGGCTGCTAACTCCAACAGCCAGGGGCAGACGGACCATTGAAACAACCTTGCAGGCACTGCGCATATCTTTGCCCCACACAGCAGCTTCTCAGCACGGGCACCATCACGTCTCCATCCGGCAAGGACGGGTACATCCTGGTGCTCAAACGATGCTCCCATAGACGACACAGTTAAATTTTTCTAGATTGCACCGTCATGTTTGGACAGGGGCCGGAGACAGAGGCGTCTCTCTGGATTTTAGGATGATACTGAATCAATTGGCTGACTAGACAGTTGGAATCGGTTTAGAAAAGACTAAAAATCACTTTCAGATTTACCCTACCGATCAAAAGAAGAACTGCGTGGCCGGGCAGGAGGAGGCTGGAGAGAAAAACTGACACGTGGATTACTCCTCCTAGGGCATCAGGAAAAACAGACTCACTCCTCAAGCTCAGTTCCGCGACCATCGCCTGTGTTCCCGTAAGACCTGCCGTACAGGTTATGGATTAGATTAtcgaacccccccccccccgagatATGATTAAGCAAATACTTTATGAGAAGGATTAATTTCTCTGAACGTTTACTTTTCTGACTGATCTACCGGAAAGAGTAAACAGCCGAAGCGGTTGAAAGAAGGCTGCTGTTAACTCGCTGTTGAATGGCAGTTATTCAAAAATATGGCAAGAACTATAGCTACGATTTGGTCTGTCACAAGGAAAACCATCCGTCTGACAAGATCGGAGCTCCTGCATGTCACAAGAAGTGGCCTGAACACACCACCTGGTCAAGGCCAGTGGCGAGGGTATGGACGGTGGTGCTGCTGCTTGGGACATGCCTCCTCTACTGCGCCCGTGTGGCGATGCCCATCTGTGCCGTCAGCATGGCAGAGCAGTTCAACTGGAGCAAGAGGGAGTCCGGCATGGTGCTGGGCAGCTTCTTCTGGGGCTACTGCTTCACCCAAGTGTTCGGAGGCTACGTCAGCGACCGGGTGGGTGGTGAGAAGGTCCTCCTGCTGTCTGCAGCAGCCTGGGGGTCGATGACGGCCTTCACCCCGATCCTGGCCCATTTCTGCTCCCAGCCAATCCTCTCCATGACACTGGCCCGCTTCCTCATGGGCTTATTGCAAGGAGTTCATTACCCTTCTCTGGCAAGTCTGTGCTCTCAAAAGGTGGTGGAAAGTGAGAGAGGCTTCCTCATGAGCACTGTGGGTAGTGGCTCCTACTTGGGCACTCTGGTGATTGGAGGGGCTGGCTCCCTCATGTTGGACCTGTATGGCTGGCAGAGTGTTTTCTATGCATCTGGTCTCCTCTCAGTCCTGTGGGCCTACTGCATGTGGAAATATCTGCTCAAAGGAGAAGGGCCTATCATCACCCTGGAGTCCCTGGGAAGTGGTGGGCCCCAGTCCAAACTGTCCAAAAGACATTGGTTACGGCTCCTAAAACAACCTGCAGTCTGCGCTGTGATCGTTACACACCTCTGCACAGCAAGCACCTTCTTCACTCTTTTGTCATGGCTGCCAACATTCTTCAAAGACACTTTCCCGAATGCCAAGGGTTGGGTGTTCAATGTCATTCCCTGGTTGGTGGCCATACCCTCATCCCTCTTCAGTGGCTGGCTATCTGACCACCTCATCAGTAAAGGCTTCGATACAGCCTCAGTGAGGAAGTTGATGCAGTGTTTCTCCATGGGTGTGTCCAGTGTGTTTACCCTTCTTCTGTGTGGCAACACTACCTTCCCCTGGGCTGTAGCATTTGTGTCTGCCACCATGGGCCTCACCACCTTCAGTCACAGcggTGTATCTGTAAATGTTCAAGATCTTGCTCCTTCCTGTGCTGGAGCTTTATTTGGTGTTATGAATACATGCGGTGCTTTCTTAGGGGTCCTACTGGTGTATTTTTCGGGGTACCTCATTGAGGCCACAGGCTCGTGGGCATCTGTGTTTGCCCTTATCACCACCGTCAACCTGCTGGGCCTCTGCACCTTCCTGGCCTTCGCGGAGGCGCGCCGGGTCGACATTGACTATAGTAAGGTCCGTCACCACGACATCCACATCTAAATCGTCTGCCATCAGAGGGACAAGCATTCTATCCCCCAAGGGAGATACGACCTGGGCAACCAGCAGCTAGGACATTATCCACATTGGAGAACTAGCCTTTGGATAGCAAGTAGCACACGGACAAAGTCCGCCTATCACATCTGGAAAACTTTGATTGGCTCTGTGTCTGGTTGAGGAAGTACTGCAACAGTTactgaaaaacacacagcagagcCTGTACACTGTTACTGAAAAATCTTGGGGCTAGAACGTCAAATCCTAGAAAAACACAACTGGGTTAGAGGATGCTCTGTCATTGAGAACGAGAGAAGTCATGGAAATTGTTATCCACATATTATTATATGCGAGAGTGATGGACGTGGTAGCCTCAGGAGCTCTCTGACAGTTGTGACAGACCACGTGGTGTGTTCTTACCCTGCAGGGGTGGGGGAGGCGGTTTGGGCACACGTGTGTGACGCAGGGACGCAGTCCAGCCTCTCGCACCTGAAGTCTTTTATTAGTACGCCCCACTCACCCATCGCTGTCTGAGTGACACCTCATTACCCAGCCACTAATTACTTGGCAGGCGCTGTAATGTCCTGTACGATCTACCTTCTGTAGTCcccatctccatggttacaAGCTCATCTTATTGTTACAGTCGGAGGGGGTGAAAGGGATCATGGGAAGCCAAAGgtaattcattattattttctttctacgTGCTTGCATGTATTAGAAATACCTCACTTAATTATTTTGGGTACTTAGATATTTATATggccttttaatttttttggttaattttcaaaagattttttttagacaagaaatatattaaatatatataaagttagATTACAGGAACAATACATATATTAGGTAAGTAAGCTATCAACAGTGTGATGCAGTATGAATAGACCTTTCTGCAAGTCTAGTTTCCTCACTTCTTTTCTGACCTGCACTTTGGTCCATATATCATTTTGGTGACACAAGGAATGTTGCGGGGCACGTGAGAGGATTAGAAATCTTAGGTTCAACACAGTTGAGGAAGTGGAGAACATTTAGCATATGGATATTACTGAGAATTATGTAGTAACATAAAGCTAGCTGCATAGCTCTGGTTGAAAGTGATTTGTGGCATTTAGCTTTGGCATTCACAGCACAGTTTAAAGATTTCATTTTCAATCTTGTTGTTTACTTGACACATGTACCTTTTTAAATCTAtgcatttattattttgtgcCTGATTTAAGCAATGAGAGAAGTTTAAGATATGCTCACTGTGtcttttattgattattatacaTTGCTACATGTTTGCCTTCTTTGTAGGAGTTCTGTTGCTTCTGTGTGACTTGTTATTGTTATTCCATACAAAGGCACATACATTTTCTTGGATGTTTTCTATAAAAACTTGGAAGTGTATCCTTTGGCTGAATATTTTGTCGATATAGATTTAATTTCTGACATGCCCAATATATTTCTTACATTGTCTAAGTCagtgaatacaaaaaaaatgtgggcataaGAAATTAATTGGATTTTTTCAAACCTTTGCTCACTGTCTTTCAGAGTCAAGATACATTTTCTGTATCAAACATAtttagattgtgtgtgtgttttgaataaTTTATTTTGATATCTAATCTGAAATTGATATATCTGCGCCAAATATCActttgattctgttactgtaccTAAACTATCTTTTGTAGTGATCATACACAAAGTGTATGCGTGGATCTTTGAGATACataatttatttacaaaatacCATGGTATAAGTTACTCAGCcttcaacattttcttttgtcaAAAAAGACGCTCCACATTCCTCAGATGTTTTGCCGCCCTATTTACAACTGcctttattgtttgtttgtttttctgttactGTTATGCAAAATGTAAAGAATTGTAAATGTACATGACTTCTGTTCCCCAACATATCTCACTGTAGGTTCCTGAAAGCCTTCTGACAAATCCTTTTTGATAACATGTAAGATATGTATGATAAAGAATACATTCCTGCAAGAAAATGCAGTATTCTAATGCTTTCAAGATATGTTGTATTGAGAAGCATTTATtaactttgaataaaaaaaatatattttgtcaaaA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K12303 SLC17A9; MFS transporter, ACS family, solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU67540 lncRNA upstream 413057 17163179 ~ 17163665 (+) True G50518
TU67530 lncRNA upstream 424809 17151182 ~ 17151913 (+) True G50509
TU67525 lncRNA upstream 441232 17134688 ~ 17135490 (+) True G50505
TU67495 lncRNA upstream 471758 17098622 ~ 17104964 (+) True G50493
TU67374 lncRNA upstream 746842 16826880 ~ 16829880 (+) True G50410
TU67785 lncRNA downstream 81258 17668838 ~ 17670631 (+) True G50700
TU67813 lncRNA downstream 162705 17750285 ~ 17776236 (+) True G50725
TU67815 lncRNA downstream 188822 17776402 ~ 17835766 (+) True G50727
TU67848 lncRNA downstream 356132 17943712 ~ 17944815 (+) True G50752
TU67849 lncRNA downstream 369618 17957198 ~ 17957644 (+) True G50753
XM_039799569.1 mRNA upstream 1579 17571779 ~ 17575143 (+) True LOC120558532
XM_039799568.1 mRNA upstream 1579 17572604 ~ 17575143 (+) False LOC120558532
XM_039800746.1 mRNA upstream 58308 17511672 ~ 17518414 (+) True LOC120559200
XM_039801138.1 mRNA upstream 181999 17375003 ~ 17394723 (+) True LOC120559455
XM_039801139.1 mRNA upstream 181999 17375268 ~ 17394723 (+) False LOC120559455
XM_039799338.1 mRNA downstream 98567 17686147 ~ 17689867 (+) False birc7
XM_039799337.1 mRNA downstream 98573 17686153 ~ 17689867 (+) True birc7
XM_039801198.1 mRNA downstream 153791 17741371 ~ 17786398 (+) False LOC120559485
XM_039801196.1 mRNA downstream 153792 17741372 ~ 17786398 (+) True LOC120559485
XM_039801195.1 mRNA downstream 153792 17741372 ~ 17786398 (+) False LOC120559485
TU67547 other upstream 379549 17185911 ~ 17197173 (+) True G50523
XR_005639235.1 other upstream 582021 16977898 ~ 16994701 (+) True eif2d
TU67161 other upstream 1171117 16399197 ~ 16405605 (+) False LOC120559923
XR_005639214.1 other upstream 1182490 16380044 ~ 16394232 (+) False brpf1
TU67110 other upstream 1199233 16375308 ~ 16377489 (+) False LOC120559119
TU67812 other downstream 153880 17741460 ~ 17772584 (+) False LOC120559485
TU68128 other downstream 1094563 18682143 ~ 18686302 (+) True G50983
unassigned_transcript_226 other downstream 1141900 18729480 ~ 18729551 (+) True trnaa-ugc_5
TU68363 other downstream 1868911 19456491 ~ 19462114 (+) False LOC120558947
TU68439 other downstream 2180072 19767652 ~ 19768564 (+) False LOC120558920

Expression Profile