RNA id: XM_039801613.1


Basic Information

Item Value
RNA id XM_039801613.1
length 1647
RNA type mRNA
GC content 0.51
exon number 4
gene id c1galt1a
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21607339 ~ 21620201 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTTCAGAAGAATGTAAATCTGCGCAGTGGCTTTCCTCTCTAATCATCTCATTTGGCGATGCAAAACAGGGACGACTTGAATCAAAAACAATACATCAGATGAATGTGACCAGCATGCGACTATATGACTGACAGGTGTATCAGGCTGGTGCCTTTTTTTCAGAAACAGGAAATATTTCGCTGCTTTAGGGGTTGCAAGCAGATCGTGCCCACAAATCGCTGATGTCCCAGCAAAgACATGCTGTAAATGGGACATTACGGTGCTGGGGACGGTCTCACCATGAAGGGCTCCAGCTCCAGATGGGCCTTCTCCCTGGGCTTCTTGGTGGGGGCCTGCAGCATCTACTTCTTCCTGCACCAGGTGTGGTTTGAGAGGAGCTACCCCGTGCTGTCAGAGGCTCAGGAAAGAGCCACAGCGGTGTCGGAGAGACCAATCAgctggaggaaggagggagctGCTCTTATCAACCTGCTCCATCCTCACCATGCAGATGAAGACAGTCGGGTTGCAGATGTGTTGTACCAGAAGGTACGTGTTCTATGTTGGGTGATGACGGGGCCGTATAACCTGCAGAGTAGGGCCCGCCATGTCAGGGCCACCTGGAGTCGCCACTGCAATGTGGTGGTGTTCATGAGCTCTGAAGAGGACCTAGACTTCCCCACTGTGGGCCTGGGCACCAAGGAGGGCCGTGACCAGCTCTACTGGAAGACCATTCGAGCCTTCCATTACGTCTACGAGCACCATGCAAGTGAAGCCGATTGGTTCTTAAAAGCAGATGATGACACATATGTGGTGGTGGACAACCTGCGCTGGATTCTGTCCAACCACACCCCTGAAGAGCCCATCTACTTCGGCAAACGCTTCAAGCCTTACACCAAGCAAGGCTACATGAGCGGAGGGGCAGGCTATGTTCTAAGCAAAGAGGCCCTCAAGAGATTTGTGGAAGGTTTTCGGACCAAAGTTTGCTCACACACCACACCTGTAGAGGACTTGGCGCTGGGGCAGTGTTTGGAGAAGATGGGCGTTCTGGCAGGGGACTCCAGAGATACTTTGCATCGTGAAACTTTCCACCCGTTTGTGCCAGAGCACCATCTAACTGGCAAGTTCTCCAAGAGCTTCTGGTACTGGAGCTATTGCTACTACCCAATTGTTGAGGGTCCGCAGTGCTGCTCTGACCTGGCAGTATCTTTCCATTATGTAGAAGCAGAGCTGATGTACACACTGGAGTACTACACCTATCATCTGAGAGCGTACGGCTACAGGCCACGCTACCGACCCTCCTTACGTCTGGGTCTGAGCCATGGCCCACTCTCACAGACAACCGGGACTGTGGGACTTAAAGGGGTTCAGGAGGTGACAGATGGAAGGAGTCACACAACGTCAGCCTTCCTCGCTAGTGTAAACCAAACTAAATCAGGGACAGAGCAAGAGAAAAGGACAAAAGACAATCTAATCTCTCACGCCACTGAGAACAAGACTACAGTCGCTCAAGGCAGGCACCTCTGATTCCCTGCGCCGTATGTCAACTAATATTTTCTTCAGAGAGGTCTTCCTTGATCCGATCGCAGTATAATTCCAGCCAGTATGTCACTATAAACGCCCACGGTGAGAGTGATTAAAATTTGAATGTGATTTTTGTAGCGGCA

Function

GO: NA

KEGG:

id description
K00731 C1GALT1; glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU69202 lncRNA upstream 29084 21577388 ~ 21578255 (+) True G51811
TU69145 lncRNA upstream 226090 21379001 ~ 21381249 (+) True G51761
TU69122 lncRNA upstream 231076 21376031 ~ 21376263 (+) True G51739
TU69121 lncRNA upstream 240309 21366676 ~ 21367030 (+) True G51738
TU69120 lncRNA upstream 240762 21366301 ~ 21366577 (+) True G51737
TU69283 lncRNA downstream 96963 21717164 ~ 21720123 (+) False birc5b
TU69314 lncRNA downstream 192411 21812612 ~ 21813631 (+) True G51900
TU69318 lncRNA downstream 199664 21819865 ~ 21820675 (+) True G51902
XR_005639358.1 lncRNA downstream 275140 21895341 ~ 21896456 (+) True LOC120559724
TU69342 lncRNA downstream 278923 21899124 ~ 21900231 (+) True G51921
XM_039801612.1 mRNA upstream 52144 21553252 ~ 21555195 (+) True LOC120559688
XM_039801608.1 mRNA upstream 102419 21498706 ~ 21504920 (+) True slc26a10
XM_039801028.1 mRNA upstream 133965 21417136 ~ 21473374 (+) False arhgef25a
XM_039801029.1 mRNA upstream 133965 21417136 ~ 21473374 (+) False arhgef25a
XM_039801031.1 mRNA upstream 133965 21437482 ~ 21473374 (+) True arhgef25a
XM_039801687.1 mRNA downstream 96908 21717109 ~ 21720118 (+) True birc5b
XM_039801682.1 mRNA downstream 117279 21737480 ~ 21746717 (+) True zgc:153867
XM_039801681.1 mRNA downstream 117281 21737482 ~ 21746717 (+) False zgc:153867
XM_039801680.1 mRNA downstream 117291 21737492 ~ 21746717 (+) False zgc:153867
XM_039801684.1 mRNA downstream 120321 21740522 ~ 21746717 (+) False zgc:153867
TU69195 other upstream 47990 21558890 ~ 21559349 (+) True G51804
TU69117 other upstream 242909 21361290 ~ 21364430 (+) True G51734
TU69116 other upstream 243699 21361290 ~ 21363640 (+) False G51734
TU69094 other upstream 316377 21289588 ~ 21290962 (+) True G51716
TU68644 other upstream 1074877 20446243 ~ 20532462 (+) False LOC120559772
TU69309 other downstream 163065 21783266 ~ 21788322 (+) False LOC120559721
TU69347 other downstream 283341 21903542 ~ 21904077 (+) True G51926
TU69454 other downstream 436520 22056721 ~ 22060645 (+) False avpr2aa
TU69473 other downstream 473704 22093905 ~ 22094890 (+) False LOC120558641
TU69718 other downstream 936128 22556329 ~ 22560328 (+) True G52210

Expression Profile