RNA id: XM_039801741.1


Basic Information

Item Value
RNA id XM_039801741.1
length 5727
RNA type mRNA
GC content 0.43
exon number 2
gene id sox18
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6493569 ~ 6502180 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGTCGGTTAAATCTGGCCACAAGTTTCAAAACTTTCAAAgagggcagacagacagagagacggtGAGTTGGGCGTCCCGTGTGACGGAGGGGAATCGAGCTTTGGACAAACCGCTGCACCACACACTCCAAACACAAACTGTTGTCTtttgagagagaggaaagaagaaaaaaaaagagtgaagaaaagaaagaggcagAGTCATTGTGGATCATTTACAGAGGGGAATATCCTGCACCacaacttgtttgttttctctttctttctcgtCTTCCACCTCCTCTCAGATCTCGATGCTTTGCTTTGGGATTTGTGCTCCAAATCCATCAGATTCCTCTCTTGATCTTTCTCTTCGTCAACCGAAACATTTCGAGCTGCAAATTTTTTCCAGAACTTTGCAACCCAACAAGCTGAGACAGACGTTTGCAGGATTTCACTTGGACTAAGAAATTGAATCCAAGCCCGGTTCTGGAATGAATTTAACCGATCCCAGCTTGTCTAGAGAGACTCTTCTGCATGCCAGCCGGATGTCTCTCGGGGGCCCCTGGGCGTCCGGGACCCCGAGCCCTGCTTCTGATTCTGAAATAGGTTTTGAGCAGAACCTCTCCGGGGACTGCGGTTCTCCCGATGGCCTTGGAGCCGGGAAGATGAGGAGGACAGAAGCGAGGATTTCTCTGACACCCAGTTCAGGGGGACAGAGTCCGGACCTGACCCAGGCAGGAAGTGTGTCGGCAGGCACGGCCGACGGGAAGGCTGTGGGGGGTGAGACGAGGATCCGCAGGCCCATGAACGCCTTCATGGTCTGGGCCAAAGATGAGAGGAAGCGACTGGCCGTGCAGAACCCTGACCTGCACAACGCTGTGCTCAGCAAGATGCTCGGTCAGTCATGGAAGGCCCTGAGTGCTACAGACAAGCGGCCATTTGTGGAGGAAGCAGAACGTCTCCGTGTCCAGCACCTCCAGGATCACCCAAACTACAAGTACAGGCCCCGTCGCAAAAAGACCACCAAAAAACTCAAGCGAGTTGAACCGGGGCTTCTGCTTCACAGTTTAGCCCATGGCGGGGCACCAGGCCTTGGATTAGGACCTGGTATCAGCCCCTTGGGTGCAGAAAGTGTCTCTGGAGGTTCTGCCTATGGTAATGTAGGTGCCCACCCTTCACATCACCATCACTCCCACCATCTTCTGCACTCTCTCGGGCACTTCAGGGACCTCCAGGCCCCAGGACACCTAGAGCTGGAGAGCTATGGCTTGCCCACTCCGGAGATGTCCCCTCTGGATGTTCTGGAAGATGGAGCTGGGGAATCTGTGTTTTTCCCCCAACATATGCAAGAAGAGGCAGGTCTGGGAGGTTGGAGTGGCTACCACCACCACCTTCACCATCCTAACCAGCATTACAGCCATAATTACAACAACCACAGTCATCACAGCTCCATAAATGGCGCAGCAACACACAGTTCAGGAATGAGTGTTGGTGCCAGTTCAAGCAACTGTTTGAACTCCAATTTGAGTCCAGGTAGAAGTTCCAGAGTTGATTCTAGAACGAGTTCTGTCGAGTCAAATATGACGTCGAGCATGAGCTCTAGGTTAAATCCCACCTCTGGTCACCACATTGCCTTGCGGAATCCTGTAAAGTGCCCACCACCTCTGTCCGACTGCTCCTCCCCTGTGTCTTACCCCCAGCCCTCCATCAGCCTCCCTGAGCCGATAAAATCCCACCTAACGCCACATCAATCCACTGCTCCTGTCGGCTACTTCAGCCAAATGTATGGGAACAGCGCTCCAAATGCTGCGTATTACATGCCCTCTCAGCTGGGGCAGCTTTCACCTCCTCCTGAAACTTCTCCTTCTTCCTGCTCATCCTCCTCCATCCCCACATCCACCTTCCCTCCTCCGTTGCACTTAGACCCTTCAAATCCAGAGTCCTCCTGCCATTTGGGATCTTCTTCTGCTGAGTTCTGGTCCGAGGTGGACAGGCATGAGTTTGACCAGTATGTAAATGTCGGAAGGAATCGAGAGGAAGCCTACGGGCGCGGTGGGGGCTGTGGGTCGAAAGTCTTGAGTGGGCGCAGTAGCGTAGGTAGTAGCATGAATAGCAGTATTATGAACAGGGATGTCAGTAGCATTTTGAGTGGTGCTGGTGGCTGTGATGAAGAGAGCAGCCCTCTTATATCTGCTCTTTCTGATGCCAGCAGTGCTGTCTACTACAGTGCCTGTATCACTGGATAAATACTCCATGATCTCATCTCTCGATGTGTACCTCCTTGCGTACTGCACAGTTTGGTTTGGTTCATTTGAACCATTGTTACATGATCTGGAGGAAGTGTGTTGGGAACATTAGTTTTGGCTCATATTCTTAGCCATTGTCATGCCTTGCTTGTCTCTCACAGACTCCAACTCTCAATTTAAAAGCTTTTCTTCATTCTAAAAAAGAAAGATGCAGACAAGTGTTTTTTATCATAGCAACTTTTACTAGAGCTAGAGCTGGGTAGAGACAAAAtacagttttctttttaaaagtgtgaactggaaaaataaaaacttaactGGCAAAGAAAGCACTTttgtcaaataaaagaaaaatgaaaacgctAAATACTTCGTTTAGATTGATTAATGCATCCCTGAACATTATCTTGAATGATTGTCTGGCTAGCTAAGCAGCATTCCTTGACCTAGTGTGGCTAGCTGAGATTGTGTTAACTTAGTAACTAGATATGCATGGATTACTAGTTCATGGCAACTTTTAGGCAGAAGTTCTAGCAGGAGGTTTTGGCTTCTGCTGAGCAATTGCAAAATTAGCTACTGTCAGTCACTTAGCTAGCATACgtaatcagaaaaaaaactcaccATTTCTGTTGCATCACTGCCAGCTTGATGCTCTTTATCAAGATGAGTGCGTGTTAATCCAAATGAATACGGTATCACAGAAAGATCAGAACTTAATATTTTGACTTTAGGCActcaaggaaaagaaagaaataggcctatgtatgccaggcagaaaaactaaaatagcATTGTGTGTTTTCACCAACTCATAAAGGGTGCTCGgtgtgtgttagcatgtgtAATGCTAATAAACCAGGAGTCTTTATCAATAGCTGGAAACATTTATAACCTGGAAGCAGTTCTGGTGGCTACATAGTTGGAAGGATTCAGGGATGTAGGATATCAACTAGTTAAATTGTCTACCTGCTTCTACCTGTTCCACAGGTTTCGTTTCTCTGCACTCTAACCCTTTCTGGTGATAGACAGTACATGCTGTAGGAAGATTACGCAAGCAAAATGATTTCTTTAATTGCACTGTGTGTACTCTGGTCAACAGAAAAATCCACAGCTATGACAAATCTGAATTTTAAGACCATCTCGTATCATTATTGACCTTTAATCTCAGGACCAGACAAATATTCATCTCAACTGAACTTTATGAATTTAATTTAATCCATTCTGTCCATTAAATGGGAACATGAAGAACAATGAGAAATTTGGGAgatggtcagagagagagagactggataGGAGAGACTTGATCCAGCCTCCACATGTATATCTCAGCAGTGTTGTCGGGAAAGCCTTGGCCACGGCCCCGAGCAGACCACTGATGTCTCCCACAAACTGTAAGGATGTTTTACAAGCCGGgtcggttttttttttttttttctgaccgtGATACATGCCGTTCCCTCTCGGTCTCAGTCCATGACAGGGCCTCATGTCAAACTCCCTGCCAAAATATGCAAGTTTTAAGTTGCTTTGCTTCCTGGCAAACACGGATATGTTGATGAATCAAAGATCATTCTTTATGACCAGTAAGCCTCTCTGGTATAACAAGCATATCACTTGTTTaaacaaaatgtcttttttttttaagttaaaaagtGTAATTTAGTTCTACAAATAACAGAAGATTGGGGTCAGCAAATAAAGTGCTATTGGATCGAGTCTAAAGCTTCACTTTATACTTCAAAAATCATCATGTCTGTAAGGTCTGCATATTTGCAAGTTCGTGCAAAGCAACGTAGATATTGGTTAACCGTTTGGTTACAATTACAAATTGTTCCATTCTTAATTTCATTAGAACGTTTATGGATAATTTTTCATGTGGTAAGTCTTATTATTTTTGGAAATCTGGTTTTGATGTAGCCTttgactgtatatatatatatatatagatgctATGCCTCTTGGCAGCATGTGAAGGAGAAATTGAGACTATGAAAAGTTCTCTTTGCACTGGGTTTAATGTCTTAGCTGTATAGAAGGAACACTACTTATTAAAAGCCAAACAATTTAAATGTTGTACAGAAAggactgtgtttttttaatgtttcttttattaaaggaatagtttgacattttaggacatgtgtttgctttcttgctgagagttagatgagaagattgatgccaTTCTCGTGTCTGTCTTTTAAATACGGAACAGCTggcctttttttcttcaaaatcaAAACTTGGTTGTGGACCAATTCAATTAAAGGTGTTAATTATGGACCGATCCAGACTAGCTTTatcaccctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctaaacTATGCTAATCGCCTCCCGGCTCCAGCTCCGTACTTATCCCACAGACATGACAGTGACAATGACAGTCACACTCTCAATgtgaataagcgtatttccccaaaatgttaaactactCCTTTAAAGCATTGGAGCAGTGCGTTTCCactgctcttttttttgttgttcatccaaaatgtatgtgtattgtgtgtgtaaactTGCCTTCAAAAGGAAATCTATAAGTGTAAAGATCTCTTGTAGATCTGTATGGGTCTTTAATGGGTTACATGTTCCACTTAGCTCTACCAGTGACACCAGCAAACCCAGAAATGTTCCCTCCCACACCAATGTTATTTACCTACACtgctggaaatgaaaatgacaAATTTATTCGGGCTGAGAAAATCAAAATCCACAGTTGTAGCCACTGTAGAGGTCTCTCTGTATGTGAAGGATATATGCTGTAATATTTATGAATACAGTGGGAGCAAAAACCAGAAGTCTCTCTTGAAGGATTTAGCCTGCATCTGTTCTGCATTAGTCCTACAgacaatcctttttttttttttttacatgaaacaGTAGAACTAAATTGTGTATCTTGTACAGTGAAACCAGTTATATTTACCACACCGTTACTTGTGGCCACCATTGGTTGAAAACAGAGCAACAGTAGATTTTTCCAAACATTTCCTCTAGAGGATGGAGCCGCAGAGAAGCGGCAGTTCAagcaaagtataaaaaaaaaaagtacttctACATCTGCATTAGACATTCTTCTCTGTTGACACCAAACAGCCTTGTTTCCATTCTAATTTACTGTGACACACAAAGAACatcagagagacaggcagggcttcttattttttttttttttttgagtcgTGCAATAACTCTGGGGCTTTTGGTAATAattatctgaaaaaaaaagaaacacccaAGATATTGGGATTAAAACAAAGGACATTTTCTCAGCAGTCATATAACGACAAATTAAAAGCAGGATTTTCCCAGAAGTGTAGTTGTGATGCTTCTAAATCTGTCTGACAGGGatgatttttacattttgtgcagagaatagttttgtttgtgttcataTTTGAGAAATGTGGGTTGGCTGTAATTGGAAAATGGatggaaaataatgtgacaaaaTAAACTCTTCTAAGATTTCA

Function

GO: NA

KEGG:

id description
K09270 SOX7S; transcription factor SOX7/8/10/18 (SOX group E/F)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63438 lncRNA upstream 65571 6427468 ~ 6427998 (+) True G47482
TU63410 lncRNA upstream 238995 6242925 ~ 6254574 (+) True G47460
TU63389 lncRNA upstream 256743 6236194 ~ 6236826 (+) True G47441
TU63376 lncRNA upstream 636571 5856565 ~ 5856998 (+) True G47428
TU63371 lncRNA upstream 731488 5761869 ~ 5762081 (+) True G47423
TU63461 lncRNA downstream 130689 6632869 ~ 6688714 (+) True G47503
TU63463 lncRNA downstream 144475 6646655 ~ 6721672 (+) False G47504
TU63465 lncRNA downstream 194397 6696577 ~ 6721672 (+) True G47504
TU63469 lncRNA downstream 220559 6722739 ~ 6725198 (+) True G47508
TU63479 lncRNA downstream 330991 6833171 ~ 6915980 (+) True G47516
XM_039801478.1 mRNA upstream 100067 6346108 ~ 6393502 (+) True rgs19
XM_039801479.1 mRNA upstream 100067 6346111 ~ 6393502 (+) False rgs19
XM_039801480.1 mRNA upstream 100067 6346255 ~ 6393502 (+) False rgs19
XM_039801481.1 mRNA upstream 100067 6364874 ~ 6393502 (+) False rgs19
XM_039801594.1 mRNA upstream 220889 6262023 ~ 6272680 (+) True LOC120559680
XM_039802013.1 mRNA downstream 77006 6579186 ~ 6683911 (+) True xkr7
XM_039801845.1 mRNA downstream 195813 6697993 ~ 6720932 (+) True ccm2l
XM_039800794.1 mRNA downstream 227522 6729702 ~ 6774102 (+) True cables2b
XM_039800059.1 mRNA downstream 352997 6855177 ~ 6863948 (+) True LOC120558797
XM_039800060.1 mRNA downstream 352997 6855177 ~ 6863948 (+) False LOC120558797
TU63394 other upstream 292975 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 2981085 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3210399 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 3723116 2745898 ~ 2770453 (+) True G46574
TU62302 other upstream 4103057 2389946 ~ 2390512 (+) True G46530
TU63466 other downstream 195831 6698011 ~ 6705887 (+) False ccm2l
TU63965 other downstream 1610261 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1840571 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1840738 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1840738 8342918 ~ 8380392 (+) False pkig

Expression Profile