RNA id: XM_039801794.1


Basic Information

Item Value
RNA id XM_039801794.1
length 2283
RNA type mRNA
GC content 0.42
exon number 13
gene id pm20d1.2
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13284381 ~ 13292312 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTCATTCAGTCGGCACCGGTCTGCACACCGTCACAGTGAACGAGTTCCGCCTGTcacaagaaacaacaacaatgacagACTCAGGTCCAAAGTTCAAAATTTTCAAGTgtttaaagattattattagtagttttCTCATTACAGTCCTATTGCTATTTACAATAGCATCCATCAGGACTCTTTCACTGGACGTAAATGTCGGACTTCAACTCGCACGTTGGGAAAAGACGAACAACATTTCACTGGTAATAGACCACCACCAGAGAGAGGAGCTTCTTGCACATTTTAAAGAGGCTATCCGGATCCCCACAGTGTCATTCTCAGAGAAGGAGAGCAACACCACCGCACTACGTGAATTTGACAGGCTCCTCCGAAAAGCCTTCCCAACCATTTTCTCTTCAAGCTTGGTTCGTCATGAATTGGTGGCAAACTACAGCCACCTGTTTTCGGTGCAAGGATCACAGCCTGACCTGGTGCCATACCTGCTGCTGGCCCACATTGATGTAGTACCTGCTTCAGAATCGGATGGCTGGGAGGCCCCACCATTTTCTGCCAAGGAGATAGATGGCTTTATCTATGGTAGAGGGACCATAGATGACAAAAGCCCTTTAATGGGAATACTTCAGGCATTGGAGTACTTGCTGATAAAAGGCTATGCTCCACGCAGAGGATTTTACATTGGTCTTGGTCATGATGAAGAAgtcaGTGGTTACAAGGGGGCAATGAACATTGTGCGTGTACTGAAGCAGAGAAGTGTTCAGCTGTCGTTTGTCCTGGACGAGGGCCTGGCTGTACTTGACGGAGTCATTAGTGGTCTGGAAGGACCTGCTGCACTAATTGGGATAAGTGAAAAGGGTTCAGCCACTGTGAAGCTTAGTGTGTCTATGCTCCCTGGTCACTCCTCGATGCCTCCCAGTGAGTCCAGCATTGGGATCTTGGCTGCAGCAGTGAAAAGACTAGAGGAGAACCCTATGCCGAGATTATTTGGTCATGGGCCTGAACGTGGCACATTTGAGCATCTGGCGCATAAGTTCGGGCTCCCAATGAAGTTTATAATGTCAAACTTGTGGCTGTTCGCCCCACTAATGGGCAGGGTACTTGAAAGAAAACCAGACACTAATGCTTTTGTAAGGACAACCACAGCAGTCACCATGTTTAATGCAGGAGTTAAGGTGAATATCATCCCTGCCCTCGCTGAAGCTTATGTAAATCTACGAATCCACTCAGCACAGTCATTACAAGAGGTCCTGGACCTAATCCAGTCTGCAGTGGGAGACCAACGAGTGAAGATGGAGCTTGTTAATGGGTTTGACCCTCTGCCTGTGAGCTCTGCGGATGAAAAGTCCTTTGGCTTCCAGATCATTAAGAAAACTGTGCTTGACATTTTTCCAACAGTTACAGTTGCTCCAGGTATCTGTATTGGGAACACAGACAGTCGGCACTTCAAAGACCTGACAAATGATATTTATCGCTTTGCCCCTGTCTGGTTTAAACCAGGTGATGCTCAGAGaTTCCATGGAATCAATGAACGGATTTCCAAAAAGAACTACGAGGAACTTATAGAATTTTACTTCAGTCTGATTCAAAACTGTGACATTCAGAAGCTCCCTGAGCCCCACAGCTCTGTCCATGAACTCTAAGGAATATACAATATGGGTAACCGGTCTAACAAATGCAATTCAAAAGCCTGTGTTATTGTTAGTCTGAATAATTTCAACAGCAACCAACAGGACCTTGACTTACTGTATAGTCACTaaattttaaacaaaatgtgATTCTGCTTTTTAGAGCCAGGAGGTTGCATTTTCAATTGCCCTGTAATTGTAGCTTTACAGTAAACAACGGATGCTGTTTAATCTTGTTTGATGACATACGGTTTTGACTTTGTTGCAATGAAATGATCACGGCATAACTATGTGAAGCTCCTTTGCATTTGTGATAAAGATTTTGCGGAAGACTGCTGTAATGATTTATGGATGTATTTAGAACTGATTTTTGTTGGGCTGCTAATAATACTGTAGTTCTTAAAATGATGATGGTTCATATAACTTTAATGAAAATTGCTGcataaatatttttcttcaGACAATATAAAAGTATGCATTTTCTGTGAAAATGCTGAAGGGTGatattttttgttatgtttgcTGAGTGAAGTACAGTAGTTTTTAAAGAATtctgtaatgttaaataacTGACTATTTAAAATGAATTGTGATTTGAATTTGCACACCATTTTTAGACAGGCattgtttaaaattacaacaaaactTTTAATGATA

Function

GO: NA

KEGG:

id description
K13049 PM20D1; carboxypeptidase PM20D1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65887 lncRNA upstream 355910 12928256 ~ 12928471 (+) True G49346
TU65874 lncRNA upstream 356201 12921005 ~ 12928180 (+) True G49334
TU65844 lncRNA upstream 439947 12835727 ~ 12844434 (+) True LOC120559236
TU65865 lncRNA upstream 443816 12828581 ~ 12840565 (+) True G49330
TU65847 lncRNA upstream 500593 12780615 ~ 12783788 (+) True G49314
TU66038 lncRNA downstream 14528 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 73419 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 73419 13365731 ~ 13378409 (+) True G49474
TU66121 lncRNA downstream 140287 13432599 ~ 13433217 (+) True G49502
TU66127 lncRNA downstream 152827 13445139 ~ 13446735 (+) True G49508
XM_039802003.1 mRNA upstream 130 13272566 ~ 13284251 (+) False lemd1
XM_039801998.1 mRNA upstream 130 13278617 ~ 13284251 (+) True lemd1
XM_039802001.1 mRNA upstream 130 13278617 ~ 13284251 (+) False lemd1
XM_039802002.1 mRNA upstream 130 13278617 ~ 13284251 (+) False lemd1
XM_039801999.1 mRNA upstream 130 13278617 ~ 13284251 (+) False lemd1
XM_039800980.1 mRNA downstream 155996 13448308 ~ 13451907 (+) True slc16a7
XM_039799318.1 mRNA downstream 181954 13474266 ~ 13499442 (+) True LOC120558357
XM_039799317.1 mRNA downstream 181954 13474266 ~ 13499442 (+) False LOC120558357
XM_039800757.1 mRNA downstream 234996 13527308 ~ 13531488 (+) True LOC120559207
XM_039801319.1 mRNA downstream 272313 13564625 ~ 13605435 (+) False LOC120559547
XR_005639216.1 other upstream 400094 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 626073 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 825942 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1060743 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 1073972 12182209 ~ 12210409 (+) False nol4la
TU66161 other downstream 240078 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 820738 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 820956 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 820956 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1272555 14564867 ~ 14567456 (+) True G49773

Expression Profile