RNA id: XM_039801818.1


Basic Information

Item Value
RNA id XM_039801818.1
length 4578
RNA type mRNA
GC content 0.48
exon number 18
gene id LOC120559796
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12708643 ~ 12722596 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGTACCAAGAGGTTTGGTCCAATGCTGCTGTGGGCCAACAGGAGAGGGAAGGCTGGGTGGGGGCAGAACAGAAGGGAGAGGACAGCAGGGCGCACACTCGCCCAACACCTGCACCTGGTCCCTTGATTCACACTCCAACAACTCCCTTTCAAGGATCAATGGACCAAGCTCTTGCTCACATCACGGTGATGGTTGCTGCCATCCAGGCTTAAACTTTTTTTTGGAAAGAGTGGAACAAGCATTCAGGGATcagctgtcttttctttttttttttgtaatgttgaATGGAAGAAACGCTAACAGCGACTGATTAGGCAGCTTTTTTTCCCTGTCTTTCCCAAGGGGAATTTGCAAACCTATCGGATTGTTTTATGCCTGCGCAGCGCGGCTGAGAGGAGATTTTCCAGCCCAGCTCCGAGGCACAAAACGCGGGGAATGCAGCGGTAACATCCCGCAACTTTTTGGATCTGAGATCTCGTCGCGGGTAGGCTATCGAGAAAGTCAGCAAGCAAAAGATTTAGATCTCTGTGGGCTACCTGCATGACCGTTACCATGACAGCATCTGGAGCCCAACTCCTCCTGTTGGCCTTATGTGTTTACAGAGTCTCAGGCCTGCAGCAGTCTTCTCCGCGGGTTCGCCTCTCCTTCAAAGAACTGATGGACACGAGGGCAGCGCGGCCCTTCAGTTTCTCCTTCAACACCAGCGACTACCGCATCCTCCTGATGGATCAGGATCAGGGCCGTCTGTATCTGGGCAGCCGGGAGTACCTGGTGGCTCTGGACATGCACAATGTCAACAAGGAGCCACTCATAATTCACTGGCCAGCATCTGCTAAGAGAAAGGGAGAATGTCAGATGACAGGAAAGGGAAGACAGGGTGAATGTGCCAACTTTGTGCGGTTGATAGAGCCGTGGAACCGCACCCACCTCTACACCTGTGGAACGGGGGCGTACCAGCCTATCTGCACATTCATCAACAGAGGCTGGAGGGCAGAGGACTACCTGTTTAGGCTGGTCCCTGGGTATGCGGATTCAGGGAAGGGAAAGTGTTCCTATGATCCCAAACAGGAGAGCATTGCAGTTCTGATCAATGGTAACCTATATGCAGGGGTCCATATTGACTTCATGAGTACAGATGCTACTCTGTTCAGGACCAtgggagggagaacagcaaTCAGGACGGAGCAGTATGACTCCAGATGGCTCAACGAGCCTGTGTTTGTTCAGATCCAGCAGATCCCTGACAGTGCAGAAAGGAACGACGACAAGCTTTACTTCTTTTTTCGTGAGAAGAGTCTAGACTCGAGCGGCGGGGCGAGCCCCAGCGTTTTAGCCAGGGTTGGAAGAGTGTGTCTGAATGATGAAGGAGGCCAGAAGTCCCTGGTGAACCGCTGGACGACATTCCTGAAGGCCCGCCTTATCTGTTCAGTGATAGGAGAAGATGGAGTGGAGACACGTTTCGATGAACTACGGGATGTGTTCATTCAGCCCACACAGGATGAACGAAACCCCATGGTGTACGCTCTCTTCACTACAGCGGGCTCTGTGTTCAAGGGCTCAGCCGTCTGCGTGTACTCAATGGCTGATATCCGCAATGTCTTCAATGGACCGTTTGCCCACAAACATGGCCATAACTACCAATGGACAGAGTACACTGGCAAGATTCCCTACCCACGGCCTGGAACATGTCCAGGAGGAACCTTCACTCCTGGTATCCGTTCCTCCAAGAACTTTTCAGATGAGGCTGTGAATTTCATCCGAGCTCATCCCCTCATGATCCATCCAGTTTACCCAATCCACCGCCGCCCCCTGGTGGTGAGAACCGGCGTGGACTACCGATTCACTGCCATGGTGGTGGATCAGGTGGATGCTGTGGATGGACGCTACGAGGTGCTCTTCCTGGGGACAGATCGAGGCACTGTCCAAAAGGTCATCGTTTTGCCGAAGGACCCGACCAGCATGGAGGAACTGACACTAGAGGAAGTGGAGGTTTTCAGGTCCAGAGCTTCAGTCAAAACAATGAAGATATCCTCTAAAAGACAACAGCTGTACGTGTCATCAGACGCAGGGCTGACCCAGGTGTCGCTGCACCGCTGTGGCGTGTACGGCAGGGCCTGCTCTGACTGCTGTCTGGCTCGAGACCCCTACTGTGCCTGGGATGGAGAGAGCTGCTCTGCCTTCACCCCGTCCACCAAGAGGAGGAGCAGAAGACAGGATGTTAAACATGGTGACCCACTGAGGCAGTGCAGGGGCTTCAATGCCAAAGtgGAGAAACGTCTGAGAGAAACCGTGCAGTTCGGGGTGGAGGGCAGCAGTACCTTCTTGGAGTGTCAGCCTCGCTCTCCTCAGGCCACCGTCAAGTGGCTTTTCCAGcgggaaggaaagaggaaagtgCTCAACCGTGTGGGAGGGATTCTGAAGACCAATCATGGTATCCTCCTGAAGTCTCTCAACCAATCAGACGCGGGGCTCTACCACTGCCTCGCCACTGAGAACAACTTTAAGCACACAGTGGCCCGCGTGGCGCTGCGCATCCTGGATCGAGACATCGTTTTAGCGCTCACAGCTCAAGATGAGGATGAAGAGCCCAAAACCCGCCAAGCTGGACCTTACACGCAGTCATCTCTCGTCTCCACACCCTTCCCACCTGAGATTAGACTGATTAACCAGTACTGCCAGTCCTACTGGGAACAACTCAGTCCcaaacagcaacagcagcagcgcAAGCGCACCAGCCGCAGGCACACAGAGGGCCAGGACCAAGGCCTCGGCTAGAGGACAGGACAGACACTGTCCAACACTGGCCTGCGTGGACTTTTAGGGTGGACTTTTATGTTTTGACATGCATCTTTGTGCGTCGCCTCCATTCATTAGGCAGGTGATGCTGTCATGCTGTTGTTAAAGTACTATATTTGTGGTTTTGCAAGTGTCAGTCTCGAGAATACAAATTGTGTGTATTTCACATTATCTGTCACCACTTCCCAAAGAATACCGTACAGTTTAAATCAACTTGTTCAAGACTGATCACCTATCGTAGGGGTTCGTTGGTATGTTCAGGTGCTTGTGGGAAACCCCAGCATCGGTGACTTGAGAATCACTCTGGAAGGTAAACATTTATAGTGcaagaaactagaaaaagaaaaaaagatgtaatTTTTCACAATATCCATGTTTGCTTATTATGCATCTTTTGGATTTCATTTTCCAACAACACAACTAGTGAGAGCACAGATTTTCGGCTGCGGATTTATTTAtcatcatactgtatatttaacacAAGTTTGTCGTTGATTAGGAAACTGGTAAGCTGATGTATATGCAGCGTGTAGTTAACAGGCTTCAACATGCAGAACCACAGGTATGTTACCGTCAAGTATCTTGAGACAGAAATGTAATATATTGATtgtgaatataatatatatggtCATTGGATTACTCTTGTATGAAAATAATATGATGATATAAATGCATATGTTGCATGCATCATATGTTGTTTGTTGCaagttgtacattttactcGGTGTGTAATGATGTTTGTACGGTGTAATGTTTTCTGTTAAGCTAATTCCATTGGATGTTGTCATATAATGACTCCCTTACTGTCCTGTGCTCTAGTGACCTACAGTATGTGAGTGTTGAAGATATGCATAGCATACAGTGTTCTTCCAGTTATGCACTTTGTCGGTGGCGGTATTCGAGGGAATTTGGTATCTTTGCACAGATGTATGAGAAAATATAACAGGAacataatcttttttttaaatgtacagtatgttattaTAAAAATGGGAATGGAACTGGCCCAGATTTAGTATTGATAGTTGGTGTTTTGTTGTATGCTGTATTTACAGATTTTTAGGTGTAAGGAACCCGATTTGTTTTCCAGTCAGAGCCATTCTGAGTGACACAGTGCCATGTGCTGCCATGCTGATGAATCCTACACTGGAAATGTTCAagcatataatatataaacatttCAGAATTCTCTTTTCCCTTCCTTTATATTTAGATATTCAGTTAATCACCTCAAGTCATATTCCAGTTTTATTATCAATTATTGAACCTGAAATCAAACATGTACCAGTATTGCAATTCAGAGGTTTATAACCAAAAATCACAGTTGAACTAAATCCACGCAAACGAGAACTTCTGTCATCAGTCATCCCATTCGTCGTCATCGTCGTCTTCATCTCCACCCTCATCTTCACTTTCAtctgagagagaggacagatagaAAGATACATTATGAGGCCTTTTTTGGTGCAACTCTTCTGTTATGTAGGGTGTAATGAATGTTCTAATATTTACCAGAGGAATGGATGGCTTTACTCCTCTTCTGCATGACCATCATGAGGGCACCAACGATGCCCTCGCCTGAATCTGATGGTGTGGGTGGAGCTGCATCAGGACTGTCTATCACCTAAAAACACACCAGGACAAGAGGGCAGCGTTTGAACATGAAGATCTGCTACAAATGTCCAAAACTTAATTGGACTTATCACGCGTTACGGCATGTCAGTCCAGACTTGTGTACTTATATAGCatgtattaaatgttttttggagAAAAAGGAA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65816 lncRNA upstream 30965 12674342 ~ 12677678 (+) True G49301
TU65749 lncRNA upstream 47272 12660427 ~ 12661371 (+) True G49241
TU65712 lncRNA upstream 197065 12510042 ~ 12511578 (+) True G49230
TU65703 lncRNA upstream 232618 12474087 ~ 12476025 (+) True G49223
TU65700 lncRNA upstream 236371 12470450 ~ 12472272 (+) True G49221
XR_005639364.1 lncRNA downstream 4004 12726600 ~ 12732417 (+) True LOC120559802
TU65847 lncRNA downstream 58019 12780615 ~ 12783788 (+) True G49314
TU65865 lncRNA downstream 105985 12828581 ~ 12840565 (+) True G49330
TU65844 lncRNA downstream 113131 12835727 ~ 12844434 (+) True LOC120559236
TU65874 lncRNA downstream 198409 12921005 ~ 12928180 (+) True G49334
XM_039799436.1 mRNA upstream 4554 12697896 ~ 12704089 (+) True tspy
XM_039799437.1 mRNA upstream 4554 12697896 ~ 12704089 (+) False tspy
XM_039799438.1 mRNA upstream 38249 12662475 ~ 12670394 (+) True wdr13
XM_039799239.1 mRNA upstream 50335 12652384 ~ 12658308 (+) False LOC120558314
XM_039801815.1 mRNA downstream 21964 12744560 ~ 12766040 (+) True zgc:162200
XM_039801816.1 mRNA downstream 22177 12744773 ~ 12766040 (+) False zgc:162200
XM_039801206.1 mRNA downstream 46213 12768809 ~ 12779241 (+) True nt5dc2
XM_039800819.1 mRNA downstream 72347 12794943 ~ 12838838 (+) False LOC120559236
XM_039800797.1 mRNA downstream 72351 12794947 ~ 12843395 (+) False LOC120559236
XR_005639089.1 other upstream 50335 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 250204 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 485005 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 498234 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 611806 12092779 ~ 12096837 (+) False LOC120559364
XR_005639216.1 other downstream 138125 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 809794 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1390454 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1390672 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 1390672 14113268 ~ 14121022 (+) True hmga1a

Expression Profile