RNA id: XR_005639365.1


Basic Information

Item Value
RNA id XR_005639365.1
length 7628
RNA type transcript
GC content 0.45
exon number 12
gene id nol4la
representative False

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12182209 ~ 12210409 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACATTCCCAGGTGGCGCATGTTGATATGTGGCCACAGGAGCACGATGTGAGCATCTTTgcgcttttttttaaagggttgAGCAACCCGCATCCGAAAATAGGGTTGGCTGTTAGAAAGTAGGTCGATAGGAACTGAGAGCGACGTTTCTTTCCACGCTTTTGTCTGTGTTCTTTGTTGTTTAGCGaggactgtgttttttttttcatagccTACCCTTTAGTGAAGAGCGTTTTACGCACAGGTGGGAGATGCCCGCTCAGCGTGCTGTAGGACAGCCCCCCTCTCTGCTCCTCAGCGGATGATGTGAGGAAGTGACATTTTTCACCGCTGCGGTTCGGGACAGCACTGCTCCGCTGCAAACAGGTGTGCTACCGTCCGGGTCACTTTTGCTGGGAAACCACGGAGAGGCAGCGTCCCAAAACCAGAACCAAGCCTTCTTGACACGGGACAGCGGGGACCACAGGAGGAGAATCAACCCGGTCAAGTCTTTATTAGCCTGGGCTGTTTGAACGGgttcagacagagagacagagagatagagaaagaagagagagagagagagagagagagagagagagagagagagagagagatggcaaCGAAAAAGGCGTGCGTGGATGCGCCCAAAAGGAGCCGGAGTCCGGTCGTGTTGGAGGCGGAGATGTTCAGTGAATTTCAGGACTGGTGTCTCCGGACTTATGGAGACTCCGGTAAAACAAAGACCGTCACCCGGCGAAAATATAACAAAATCATGCAGACACTGTTGCAGAACGACGAGATGGATGGCGTTTATATCGACAACAGCCACATCAACGCCAAATTCAAATTTTGGGTGAAGTCTAAAGGATTTCAGGTCGGGACCAACGTGTTGGGAGACCACAACAAAAAAGGAGCTCCGGGGAAACCCATCCTATATGTCCCGGTCAAGACAACGtgTTCAGATGGGAATTCGGCCCAAGACAACTCCTCCCTGAAGCGTGTAGCTGTGGTAGAAGACTTCTTTGACATCATCTATGCCATGCATGTGGAGATGGGTGCCGACCCCGGGAGAGCACCCAAACATGCAGGCCAAAAGAAGACCTACAAAGCGATAGCAGAGACCTACGCCTTCCTGCCCAGAGAGGCGGTGACTCGGTTCCTAATGAGCTGTGGAGAGTGTCAGAAGAGGATGCACATCAACCCCAGCACTGCAGAGTTCAAAGAAAATGACAGACCCACCTCACTGGTCCCAGACCTCATTGATTATAACATGCCTCTTACTGCCACCTACCTGAAACAAATGAAACTGCAGTGCATGACTGCCACTGAAAGGgATGACAGTTCGATGAGCAGCGAGGACATGAACGGCGTTGAGCCTACATGGGTGGCAGCTGAGCCGCCCCCCATGCCTGAGCGCAGTCCACCTAACAGAGAGAGGATCAGCAACCCAGCAGCCGCCATTAAAGAAGAGGACGATGACGACTCCTCAGAGAGCGGCAGTGCCAATGGGCTGCCGGCCATGACCTCCCCGGAGGTGCTGGCTGTGGGTGGGAACCCCCCAGATGGTGGGGCCCCTTACAGGGAGGTGACAGAGAACGGGCTGAGTGCTCCCCTGGACTTTAGCACCACCTCACCCTCGTCCTCCTCAGAGGATCAGCAGCCGGTCATTCTGAGCGAAAGGCTGCTGCAGGCGGGCAGCTCGCCACCAAACTCTTACCCCGCAGACCCCAACAGGAAGTACCCCATCAAAACAGAGTATGCCAACAAGtcCCCTCCTTACAGTTCAGGAAGCTATGACTCTGTAAAAACTGAACTGAGCATGAGCGCAGAGGACTTGACCTCTGGTCGGGCACAGATCATTGACGACGACGATGACGATCATGACGACCACGATGACAGCGACAAGATCAATGACGCTGAGGGTATGGACCCTGAGAGACTCAAAGCCTTCAATaTGTTTGTGCGTCTGTTCGTTGATGAAAACCTGGACCGCATGGTGCCCATCTCCAAACAGCCCAAGGAGAAGATCCAGGCCATCATCGAGTCCTGTAGCCGCCAGTTCCCAGAGTTCCAGGAGCGCTCCCGCAAGCGCATCCGCACCTACCTCAAATCCTGCCGCCGCATGAAAAAGGGCGGTTTTGAGATACGACCAACACCTCCTCACCTCACCTCTGCCATGGCTGAGAACATCCTCGCTGCTGCCTGTGATAACGAAACCCGAAATGCTGCCAAGAGGATGCGGCTCGATGTCTACCAAGCGGATGAACCTGCCTCTGTTGACAAGACCAACTCGAAGGACCCGGCCTCTGTGGCCCCGTCCGGGTTCACCATCTCCAGCGCAGCTTTTGCCCAAGACCAGCTCTACACCAACGGAGGCCTCAACTACAACCTGCGGGGATACGGGACAGTCGGCAGCAACCAGCAGAACTCTGGTGCTGCACAAACCAACGGTCCCACAGATCTGAGTATGAAGGCAATCGCCCCGTCCTCCAGCTCCAACAGTCACGGTCAGGGAGGCGGCGGCGGTGGAGCTTCGGCTCAGCTCAGCCCTCCGGAGGTCACGGCGGTGAGGCAGCTGATCGCAGGATACCGGGAGTCTGCTGCCTTCCTGCTGCGCTCAGCAGACGAGCTGGAAAACCTGATCCTGCAGCAGAACTGAGTCCAAGCCAAACCTTCTCCTAGCCTGTCCATCTCTGTCGCCCTCGTCAATCACATCAGGGCCAGACTTTCACGCAAAGACACAAATGTCCATGAGTGATAGGCCTACTGCAGTGCactgtgggtaatgtaggtaCGGTACCTTATTCCcacatgtgtttatgtatgtatggaCAGGCCAGAACATATCGCAGGCTGAAAAAAAATTTTCTTTATGCATTTGGTTCACTTTGACCTTAGTGCCCTGTTATCTGTAGCCATTCATCCCATTCAGTTCATTTTACCACTTCAACCTCCATTCGTCTCAGGAAGCGATGATCTATGTGGAAGAATTATCTGCATTGGTGCACAGGGGAGAACCAGAACCTTAAACTAGCTGTGACCATAATGCCACATTGGCTCGTTTATGCAGATGTTTGGGCAAATTAGTAGTTAAATAGCAGTGACTTTGTGTCATTaacttgtttctatttttactcAAGTGTAAACTATGCTGTACGGTGGCATCTTTTGATTTGGTCGTCTAAACAACAACTCTCCAAATTCACTTCTGTGTCAGGAAAAATGTATTGCTTTCTAAAAGTCTGCAGATGAATCACTGCTAAATCCACTGACTTGTTGACTTACAGCTACTAAATGTAGAGAAGGGAAAAACGGGACGGTGTTTGACAGTTTTCATCTGAAAAGTTTGACAGATCCGTTAAAACTATACCTCGGTCCTGCTCTGTTGGATTGGTTTCCAGATTCTTAGGCGTGTGGTTACGAAGAGACAAAGACTCATTACCCAacgtgactttattctcagttattttattttggatatTTCATATATTTCTCATTACTTAAAAAGAAAGGAGGCTTTTAAGAAGCCTGGGTATGCAAATTGAGGTCACAGACGTCAGGGAAACAAAAGGAGATTAATATATTGTTTAGACTCTTGGTTTTATAACCAGTGCTActggaaaagagaaaaaggtgCAATATTGAAGATAATCAGTAATGGTGTGCTTACTGAAATTACTCTGTCAGACTTGCTGAAGTGTTTTAAGGCAAAAAGGCGGAGTACTTTACCACAATCTCCTCCTGCTGTAACTAtcaagttgtaaaaaaaacaaactgaaatgaTATCCCATGCAGCATTGTAGCCAatttcaatgttgttgttttttgtgaatACTGATCTTTATCTCTAACCTCGTAACTGAGGCACTTTTATGTATTGGGATCAGTCATTCGTAGTGATAAGAAAATGGGACCTGGCAGAAAAATGAGACTTAATGTTGCAcgtcttatttattttactttaaagtgATTTTTTGGAGTCGTTTTGTGAAGGAATTGTCCTGtgagtttttttaaaaaggagcacATTGAGCTCACATGCATCGGTGTAACCCTAACATCCACGTGGCTTTACTGGAtgtagtgtgagtgtgtgtgggctgCTCAGACAAAAAAACGCTGTCCGTCTGTATCACCCCCTCTGACCTCAGCTGTGTcaaattctctctctcatctccatCATGTCTGAAAACACACTGTCTGAAAAGAAGCAAGAGACAATCTTTGAAAAAGATGTAATCGCATCACAGTTTACTCTCCCAGCTGTCtgctatggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtattcccTTTTCTTTGGTTGATGTAAGTGTTGGTATTGACAGTATGTtaattttctgtttgtgtataaGTGGAGTGACCCAGTTTGTACGACATCAATCTGTGAAGATTTAATTCAGAGGCTGAGACATTCCAAACAAGGACAATGACTCTTCAAGCAGCCTAAAAGTGGCTCGCACCTTATTGAGTTCTCAAAGTTTAAAGAgatatatttctgtatttatcacaaatcttaTCAAATTCATCAGTTATTTATCACAAATTAGTCTATTtcgcaccaccaccaccaggccGTTCTAGAGTTGGATTTACATGctaaattttacttttttttctttaattcccATGTCATTATTGGGCTGCAttactttacattacatttaaataatggtTTCTATTGCGAGTTTGGAAGCACTTTATAGCTCAGGATTAAGGTAACATAACACAGTGATTTGAGATTGTGACAAAGGACATAAGCAGCGCTCAATCTGCTTTATTGATGATAAGCAAATGGCTTCTTTTTGAAAACCTTGTTAGAGCTCATCGTGAACTCCTTAGTGGTCCATATGGGAGGTGTTTTATAAAATAGGCTTAGAAAAGCAGGACTTTTTGTGAAAATCCTGTCTCAAATTAGCCTAACAAATGGAACCAGGATAACTCTGTTTCATAAAGCTGGTTTGGACTTAATGTGAGCAGTCAAAGTCAAGTCAGGTTTATTTCATGACGATGAGAAGTGTTGCTCAtatgaacccacagagaataAACACCTGAATCTGCAACTCCCCAGTGCTTTCTGGAGCTTTATagtgagtttcagctcattgttgaGCTGTCTGGCTGcagctttactgttttggtttacTCTCAATAGTCTCATAAAAGTCGTTttcagcaggcagctgttttcagagaaaaatctctaaaaacccactgtgcactacctgctcagcaccaaacagatgacagacacagttagagactagctggtgaatatAGTTCAAtgatagtggagcatttagcagcgaAAGAGCCTGACGTTTCCGTcgggagttggtggagaccaaaacggAGTTAAAAGAAGAGGGAATATTacacttacattcatcaggtgaacagaaaaacaactcacaatgaatgttatgttGCTTCATAACGGCTGGATATGTCAATAGACTATTTGCTAACAACACCTCAACTTAAAATGTTATGATAAATAGAAATGTTGtgttcacaaaaaaaagaagcagtgtTTGCAGGTTCAAGTTATCGGTTAGATTAGGTATCTTGAGCTCAGATTTTAATTGCACAATTAAGTACATTCCATGTCAGTATGTGACCTAAATTTGTTGTGTGAGTGCATCAGACTCTCCCAGTGCAGCAGTAAAGAGGAACGCTTTAAGAGAACACCATGTTTCAGTCTGGCAGATTCATTGTGATACTGTTGAAGCCTGAGCTGAAGCTAAGCCTGACTTAGGTCAGACTTCTCCAACCTCCTTTATGAAACAGAATTTCCCGACTGACTGGAACTGGTACTGTTGGTTTGATGAAACACCCCTCTGGGCTCAAACAGACATAACCATAGATGTATGGGGGACCTGAGTCCTCACATGTCTTCCTCGTCTCCTCCAACCTGCTCGTTTGTCCCTGCAGCCATAGCAGATCCTCACACTTCACGTCAGACTCAGTGATGTCATGCTGTCCCATCCTCACAACCAAACATCAGCTTGCAGGTTTGTAAACTGTCTTAAGTCTACGCTGAGCAACATTTGTGTGGAGTTACTGTGATCAACGACAACCACTTGTTGTCATGTTGTTGTTTCTAATAATGCCCAATGGATTTTCTCTTTGTATTGACTGGACAATGTAATCTATTGGTGTTGATTAAAAATGCCCTGGTAGCTTGTGGATTGCTAAAGTGGTCagataaatgtactgtatagctgtacaaagagtgataaaaagatgttttaaaccttttttttcttctgtgggTACagcactgttaaaaaaaaaatcaaagtggTTTTAGCCCTTGCTTGTTTTAACTTATCATTTGGTGGTGGTCTGTATTTCTTCTattgttatttatattatttcaattgtTGCCTCTCCTCTCCGCACTGATACGAGACTGTAGCTCTGTGCAGGAGGTTGTAATGTAAACCTGTGTGAAGCTTTGTAttcccccccccatcccctctGGTTTTGGACTCAGTGAAAGTGTGATGTTTACATGTACAGTTTTTCAGAATACTTTTGCGTTTTATTCAGGCTATATTATCTTTTCCTCACCTATACTCCAAATGTGTGTACATTTGCCCAgatattttcctttttgttgtttCATTGCATCATAGTGCAGACGTGACCTCTTTGACTATTTGGTCACTCGGTCATGAAGTGTGCCGTGACAGCTGGTTGTGGTCGGCTCGGTGTTGTGGTGGCTTCCagcatttttaaaaaggtaaatctTAAGTAAAAAGGGAGCTTCACAACTTCTCAAAGTGGACCAGCAAAGATGTATTAAGGACAACTTTAATCAACTGTTTATGAATACTATAGTGGCCTAAATGGAGATTGGTGGGGGTGTAGGTACATTTATTATACAATCCTACATTAAGTGCTCAGAATCTTTTAATATCCCGGCCGTATTGTCAGGTAAAACTCCTTGTCCTTAACCTGACTGGTACCCTGAAGGGACACTTTGACCTGTTGTTATATCTCCTCGGTAACATAAAAGCCATTCCCCTCTCCTGGCCTTTTTAAGGGGAACCCATAAACCTCAGGAAATACTGAATCTCCAAGTTTAGTTTTTATCTCATTTCTTCTGAAATGATTTAAATCTCTTAACGAAAACCATTAACATTTATATGAGATGTCTATTGTTTTGTACATTTATcattgtgatttaaaagtggaGCTTTTTCCAGTACCTGTGActtaatatttagattttttttcggAGTGTTTATAGGTAtggatatttattattatatgtgaaacaaaaagacaaaagaaaaggttGAACCTGTTTCATTTGTATGTTTCATGCAAAACTGTCCAGGTGAGATTCTCTCTGCCTCTTACATATCACTGATGAGGGACCTGTGTTTGTTTGGAAATAGCGCTTTTTCAGTGTTGCATCAACgctatgaaaaaaaaaccccagaaaaaaaaacaccagtggTTTACCAACAGCAGAGTTGCAAGGCTTTCCTCTTTGCCTGGGATGTCAGTAACTGAATAAAATAGTGCGATGAGCTATCTAACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65544 lncRNA upstream 35683 12146204 ~ 12146526 (+) True G49094
TU65536 lncRNA upstream 39682 12142142 ~ 12142527 (+) True G49086
TU65499 lncRNA upstream 91486 12090255 ~ 12090723 (+) False xkr5l
TU65403 lncRNA upstream 199474 11953174 ~ 11982735 (+) True G48978
TU65413 lncRNA upstream 274337 11907779 ~ 11907872 (+) True G48986
TU65559 lncRNA downstream 1335 12211744 ~ 12212515 (+) True G49105
TU65564 lncRNA downstream 9604 12220013 ~ 12223054 (+) True G49106
TU65594 lncRNA downstream 42034 12252443 ~ 12253795 (+) False LOC120559657
TU65598 lncRNA downstream 92245 12302654 ~ 12303403 (+) False si:dkey-70p6.1
TU65626 lncRNA downstream 153684 12364093 ~ 12364441 (+) True G49157
XM_039799909.1 mRNA upstream 40407 12129836 ~ 12141802 (+) True LOC120558724
XM_039801027.1 mRNA upstream 78310 12092821 ~ 12103899 (+) True LOC120559364
XM_039799251.1 mRNA upstream 91436 12084452 ~ 12090773 (+) True xkr5l
XM_039799949.1 mRNA upstream 99367 12068413 ~ 12082842 (+) True rap1aa
XM_039799947.1 mRNA upstream 118946 12043329 ~ 12063263 (+) True kdm5bb
XM_039801555.1 mRNA downstream 30637 12241046 ~ 12243801 (+) True LOC120559656
XM_039801556.1 mRNA downstream 30637 12241046 ~ 12243801 (+) False LOC120559656
XM_039801557.1 mRNA downstream 35236 12245645 ~ 12254060 (+) True LOC120559657
XM_039801781.1 mRNA downstream 73018 12283427 ~ 12303238 (+) True si:dkey-70p6.1
XM_039801782.1 mRNA downstream 73018 12283427 ~ 12303238 (+) False si:dkey-70p6.1
TU65506 other upstream 85372 12092779 ~ 12096837 (+) False LOC120559364
TU65120 other upstream 866217 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 1008555 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 1478828 10614031 ~ 10703381 (+) False G48640
TU64544 other upstream 2752262 9404224 ~ 9429947 (+) True G48347
unassigned_transcript_224 other downstream 13158 12223567 ~ 12223638 (+) True trnae-cuc_14
TU65687 other downstream 242126 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 442201 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 650312 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 1321981 13532390 ~ 13534922 (+) True G49538

Expression Profile