RNA id: XM_039801969.1


Basic Information

Item Value
RNA id XM_039801969.1
length 2693
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC120559891
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12646536 ~ 12650775 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTTGGCAACGGAAGTTGAACATTGTTGTTGCTGCCAAGAACTTCCTTGACCGAAGCTAACGTTAACCAGCTGAATCCAAACAGTTTTGAAGTAAAATGTCGTCCTGTTGCGTGCCTGGGTGTAAAAATCGACATTCCTCAACGAGCAAACTGAAATTTTACAGAATACCGTCTGGATCTCGGCCGTTTCAGGCCAACCGGAGACGTTTATGGCTACAAGCAATCCAACAAGCGAACGGCAGCACCGAGGTGCTCAAAGGAAATGCTCGTATTTGTGGCGCTCATTTTAAGTCACAGGAAGCGTCCATGGACCACGACAGTCCAGACTTTGTGCCTTCTTTGTTTACATACGCTAAACAGACCCCcaagaaaaaagtgaaaagTTTTGTTCAAAGGTTTTACGGTCGTAGAAAAAGGCGACGCCGTACAGACAAAACGGCTGAAACCGAGGAAAAAACAACTCCACCCAGAGTTGATTCTCCTGTGGACCTCCAGTCCTCTGTTTTGATGGGGGAAATACAGACACCATCAGTGCCAAAGGAAGGAGAAACCTTAACTAAAGAGGCTGAGACTGAAAGTGAAACCACAACAATCAAATCAAAAACACCCAGCCCAAACAAGACATCACCATCATTTAAAGTACCACCAGGCATCCTACATCTTGACAAAAGGAGTCCCATTGTGTGCCTAAAACATGTATTTGTACCAGCAGGTGGGTATCAGTGTGAGCAGTGCAATCAGTACTTCACCAATGTACCGCAGCTTATGAAACACAAACGGGAGCATGAAGAAGAAAGCTCCTTTATCTGCGACATTTGTGAAAAGCATTTCACAAGTCAGGCAGATTTTACGGCGCACCAGTGTGTCCGCGAGCCTTCCTTTCCGTGCAACGTGTGTGATCGATCTTTCACTACAAGCCATAACCTCAAGCGTCATAAACTGCTGCATGTCAAAGATGGCAGGAAGTGCGCCAAGTGTGGCGTACTGTTCTGCCAGCGTCATAACCACATTTTATTCCTGCCGTTGGCTGAGTCTGTAACCGAGTATGAAGAGGATTCCACCAATATCAAGCGTCGACATTTCGACAGTAAGTTGATGCCAGAAAGCCAGCTGGAGAAGCCTGAGCCAAGCCAGACTGCTGACCTGATCTCTATACCATTGTTTCTAAAACCTTCCTCTGTGTCACGTCTACCTCCGCCAGTTCCCAGGCTCTCAAGGAACCTGCACAACTATCCTGCAACCTCCGTTCAGCCCCTTCCCCCCCAACATCCAGAACTACCCCCCGCACTAAAGCTCTTTTCACCACAGTACCTCACCTCAGCATTACTTGAGgttaaaagaaattatgaatatATTTTAAGCAAACCAAGTGATTGTAAGAAGAAGAATATTGTGAAGGAGGAACAATCCTCTGATTTCTCCAGTTGAGCAAAGCGTTGAGCACATCAAAAAGGAAAGAATTGCTTACGACCTGGAGATTGTGCTCTGATCTAAATAGTTTGACCTCATATGTCAAACTAGCACGTTTGCCTCAGCTGTAATGTTTCACATTTCCTTACTACTTATACCAATATCATCATGAAGCTAATAGCACATTCTGTAAAAACAAAcccattatttatatatatactttatatatatatatatatatatatatatatatatatatatatatatacatacatacatacatacatacatacatacatacatactgtgaATGTATTGCTGCACACTTCTCTTCAATGTCTATTTTCTTTGGTTGGTAGGCATAATCTGGTTCAGCACATCGATATTTTTTTATGCAAGTGACTGAACTCGTAATGCTGCTATTTTATAGTCATAATCATTTGTTTTACCACTGTTGTTTGGTTAATAACACTGTTCTGTAAGTAAGCAGAATCTGTTACTGATTGTGAAACTGCACCAGGTAGCATTTGGACTGCAGACTATATTCTGTACATTTATAACCAGTTTGTTAGTCTGTGGGCAAATGCACATTGCTATTGATATCATGGATCTCGTTATCTAGCATCATATTTGACAAGAATTGCCATTTAATTCAGTTTTCTCATCTACCTCAGCTACTGAGAAACCACATAGACATATTGTCTGTTGTTTTATATATAGAAATGTATTTGCACAtaaagttatgttttttttttaagacgtGTATGTAAATTTGGGATAAACAAGTAGGCTATTACATTTTTGAGTTTGCTTGTATGAACTAAAATCTGAAAGTGACTGAAAGCAAGGCATATTGATAGAGGAAACTGCTGTTTAGAGACTTGTTTTTGCCATAAAAGCAAGAACCTAACCTGCTAAACTGTAAGTGAGAGAGACATATTTCCCTAGCTGCTGCAGGGCTGCTGGTCTGTAGCTGACACTGACCCCCAAGGCTCTGTGAACGGAGACAAGTTAAACATTTAGCATTATATTCACATTACTGGATACAACACACTCACTGACTCTGAAGCTACAGGTTTTAAAACGGTTGTTAACACAGCAGCTTGCTGGAAGTCCTGtttttgtgtacattttttaaatgaacttcATATTAGTTTAAGTCACTACAGTCACTATATGACAATTTTATAccaaaacatgttttctttgccTCATGCCATGACTACTGTCATAGCGTTTGGGCCTTGTAACACTGACATTAAAAACTCTCAATTAAAACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65712 lncRNA upstream 134958 12510042 ~ 12511578 (+) True G49230
TU65703 lncRNA upstream 170511 12474087 ~ 12476025 (+) True G49223
TU65700 lncRNA upstream 174264 12470450 ~ 12472272 (+) True G49221
TU65626 lncRNA upstream 282095 12364093 ~ 12364441 (+) True G49157
TU65598 lncRNA upstream 343133 12302654 ~ 12303403 (+) False si:dkey-70p6.1
TU65749 lncRNA downstream 9652 12660427 ~ 12661371 (+) True G49241
TU65816 lncRNA downstream 23567 12674342 ~ 12677678 (+) True G49301
XR_005639364.1 lncRNA downstream 75825 12726600 ~ 12732417 (+) True LOC120559802
TU65847 lncRNA downstream 129840 12780615 ~ 12783788 (+) True G49314
TU65865 lncRNA downstream 177806 12828581 ~ 12840565 (+) True G49330
XM_039800095.1 mRNA upstream 35368 12590907 ~ 12611168 (+) True kdm5c
XM_039800097.1 mRNA upstream 35368 12590907 ~ 12611168 (+) False kdm5c
XM_039800096.1 mRNA upstream 35368 12590908 ~ 12611168 (+) False kdm5c
XM_039800152.1 mRNA upstream 59168 12561811 ~ 12587368 (+) True iqsec2b
XM_039800154.1 mRNA upstream 59168 12561811 ~ 12587368 (+) False iqsec2b
XM_039799238.1 mRNA downstream 1609 12652384 ~ 12658308 (+) False LOC120558314
XM_039799239.1 mRNA downstream 1609 12652384 ~ 12658308 (+) False LOC120558314
XM_039799237.1 mRNA downstream 1836 12652611 ~ 12658308 (+) True LOC120558314
XM_039799438.1 mRNA downstream 11700 12662475 ~ 12670394 (+) True wdr13
XM_039799436.1 mRNA downstream 47121 12697896 ~ 12704089 (+) True tspy
TU65687 other upstream 188097 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 422898 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 436127 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 549699 12092779 ~ 12096837 (+) False LOC120559364
TU65120 other upstream 1330544 11314662 ~ 11315992 (+) True G48765
XR_005639089.1 other downstream 1835 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 209946 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 881615 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1462275 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 1462493 14113268 ~ 14121022 (+) False hmga1a

Expression Profile