RNA id: XM_039801998.1


Basic Information

Item Value
RNA id XM_039801998.1
length 1954
RNA type mRNA
GC content 0.45
exon number 11
gene id lemd1
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13272566 ~ 13284251 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGGTTGCTGTCAATCAAGTCGTTTGTCGCAGCTGTTCTCAGTTGAGCCAGTGTGATTCTCAGACCACCGCAGAGGGTTCCTCCGAGCAGCTCTGTCGGGTTCATCTGACTTAAAAGACGTGTTTATACAAATATAAAGAAGTTGaactagtttttattttttccccccgCGTCGATTCGTCTTTCTGACATGTCGCAGTTTGTGGAGAACCCTGCTCACCTTTCTAAATTTAGACTGAAGTCAGATTTAGTGGCCCACGATGTTGCGCTGCCACCTTCCAAGAGCAAAAAGGAGGTTTATGTGGGGTTGCACTTACAACACATCGGTCAGAAAAACGCGGTGGATTTTTCTAGCGACGAGGAGGATCAAGTACAAGATGTGTCAGACAAGGAGGAGGATACAGAGATGCCCGACCCGAGTGGTTTGACTGATGACGACCTCAAGGCCGCACTGCTCGAACTCGGGGTTAAAGCTGGGCCCATAGTCGCATCCACCAGAGCCTTGTATGAGAAGAAGCTAAGGAAACTGCTTCAGTCTAATGGACATGGCTGTCTGAATGGAGTAGAGAAAGGTGTATTATACTCTGAcagtgaagaagaggaggaaaatgGGGAAGAGGAGGACAAAGAGTTGGGTTCcgaaggagaaaaagaagagaccGTTAAACAGTCAGACCAGGCACAACAAGGGAGTAGCCAGGTAGAGTTGTGTTTTCAGAATGGTGGTTTTGTTTACCCGCAGTGCTTTTTACTCTCATCAAGGCTGCATGCTCGTGCTTCTAGAAACCGTGAACCTAGTCCCAAGTGGAATTCAGGGAATGCGATAGAATCATCGGAGCAGAGTCGGCCTCCTTGCTCACAGATTCCCGTAGGAATTAGTAGAGCATCCTCTGTAGATCAGCACTCGGGATTAGGATCAGGGTTTCCATCTGGATCACAATCAGTTATGCCCGATGGTGAATCATCAATGTCCTCTCAGGCCTTCAGCATCACTCGAATGGTTGAGGAGATGGAGAGTCGCAGGTCACTCTCGACTAGCTCAGACACTGAGATAGAGTTGAATGGGAGCAATGTGCAGAAACATTGGTCGCGGTCCAACAGGCTGGACATGCCAATTGTGGACACCATGAAGAACCAGTCCCTGTACTACACTCCCAAGGCATCCCCTTATAAATGGAAAATGAAGCTTACTCAGGAGCCTGTTAAGGATACTTTTAAGGACATGTTTCCAAACACTGATGCCACGACCACAGGGATCTACGCTACTCGTCGGAGACCTATCAAAGGTGCAGCAGGGAGACCTGTCCAGTATGCATACCCAGACACTCCTGTCAGTCCCACGACCCTGGAAAAACGAGAGGTGGAGCGCCGCCTTGTGCCCATTCAGATACAGATTTTGGTCTTCCTTATTGTGATGTGCCTTCTGTACCTCATTTATGTCTGTGTTGAGGACAACTCATTTGGTCCATCTGTTGCCTTACTGGACAGTCTTTACCAAGGGTCAGACAGTGAGGAGGGGCTTTTGCTTCAGGCTGAGACACAGGATGTACCAGCACTCTCTGGACAGGAGTAACTCTGGGTTTTTTAATCCTctacatttgattttttttggtgATGCAAACCATAATGACCTTGTTCTGGGATATCTTCAGGGGGCACATATTGCTTTATAAttgactgtgtgtctgtatgggaGCAAACCTCAAAGTCTAGTTTTACAGTTCTATATGTTTTTCTAATGGATATGTGTAGTTTGCTAAACATGGAAATTAAGTTGAGACTTCAGATTTTCTCAAATGTATTACAAATAATGCTATAAATCTTTTATATTTCCTAACCCACATTGTGTAATGTCATGTTACCTTTTCAGTGATTCCGTGTTACTGTACATGTAgtctatgtattttttttttttaaacatttgaattttCAATAAAGGACGTTTTGCTTCata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65887 lncRNA upstream 350146 12928256 ~ 12928471 (+) True G49346
TU65874 lncRNA upstream 350437 12921005 ~ 12928180 (+) True G49334
TU65844 lncRNA upstream 434183 12835727 ~ 12844434 (+) True LOC120559236
TU65865 lncRNA upstream 438052 12828581 ~ 12840565 (+) True G49330
TU65847 lncRNA upstream 494829 12780615 ~ 12783788 (+) True G49314
TU66038 lncRNA downstream 22589 13306840 ~ 13307572 (+) True G49461
TU66077 lncRNA downstream 81480 13365731 ~ 13368319 (+) False G49474
TU66078 lncRNA downstream 81480 13365731 ~ 13378409 (+) True G49474
TU66121 lncRNA downstream 148348 13432599 ~ 13433217 (+) True G49502
TU66127 lncRNA downstream 160888 13445139 ~ 13446735 (+) True G49508
XM_039800421.1 mRNA upstream 19296 13255847 ~ 13259321 (+) True LOC120558998
XM_039799628.1 mRNA upstream 35324 13237470 ~ 13243293 (+) True LOC120558583
XM_039799626.1 mRNA upstream 43608 13222993 ~ 13235009 (+) True dnajc11a
XM_039799627.1 mRNA upstream 43608 13223406 ~ 13235009 (+) False dnajc11a
XM_039799527.1 mRNA upstream 357814 12911776 ~ 12920803 (+) True LOC120558505
XM_039801794.1 mRNA downstream 130 13284381 ~ 13292312 (+) True pm20d1.2
XM_039800980.1 mRNA downstream 164057 13448308 ~ 13451907 (+) True slc16a7
XM_039799318.1 mRNA downstream 190015 13474266 ~ 13499442 (+) True LOC120558357
XM_039799317.1 mRNA downstream 190015 13474266 ~ 13499442 (+) False LOC120558357
XM_039800757.1 mRNA downstream 243057 13527308 ~ 13531488 (+) True LOC120559207
XR_005639216.1 other upstream 394330 12860721 ~ 12884287 (+) False LOC120559134
XR_005639089.1 other upstream 620309 12652610 ~ 12658308 (+) False LOC120558314
TU65687 other upstream 820178 12452535 ~ 12458439 (+) True G49209
unassigned_transcript_224 other upstream 1054979 12223567 ~ 12223638 (+) True trnae-cuc_14
XR_005639365.1 other upstream 1068208 12182209 ~ 12210409 (+) False nol4la
TU66161 other downstream 248139 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 828799 14113050 ~ 14121022 (+) False hmga1a
TU66273 other downstream 829017 14113268 ~ 14121022 (+) False hmga1a
TU66275 other downstream 829017 14113268 ~ 14121022 (+) True hmga1a
TU66523 other downstream 1280616 14564867 ~ 14567456 (+) True G49773

Expression Profile