RNA id: XR_005639185.1


Basic Information

Item Value
RNA id XR_005639185.1
length 111
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id LOC120558802
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 7082881 ~ 7083074 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATTAGGTGATTTTACAAAGAGCTGGGACAATGTGGCTGTGTTAGTTGATGAAACACTTATACCACAAGagctgTGTAGCCCGATCCTACAGACCCCAACACAccagaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63528 lncRNA upstream 19275 7062067 ~ 7063606 (+) True G47543
XR_005639201.1 lncRNA upstream 81168 7000551 ~ 7001713 (+) True LOC120558814
XR_005639190.1 lncRNA upstream 89709 6990735 ~ 6993172 (+) False LOC120558806
XR_005639189.1 lncRNA upstream 89709 6991543 ~ 6993172 (+) True LOC120558806
XR_005639187.1 lncRNA upstream 101842 6979556 ~ 6981039 (+) True LOC120558804
XR_005639186.1 lncRNA downstream 77943 7161017 ~ 7162524 (+) True LOC120558803
TU63546 lncRNA downstream 79335 7162409 ~ 7252252 (+) False LOC120558803
XR_005639195.1 lncRNA downstream 226927 7310001 ~ 7313720 (+) False LOC120558808
XR_005639193.1 lncRNA downstream 226927 7310001 ~ 7313720 (+) False LOC120558808
XR_005639194.1 lncRNA downstream 227510 7310584 ~ 7313720 (+) True LOC120558808
XM_039800048.1 mRNA upstream 16708 7027077 ~ 7066173 (+) False LOC120558791
XM_039800047.1 mRNA upstream 16708 7037647 ~ 7066173 (+) True LOC120558791
XM_039800049.1 mRNA upstream 48949 7027080 ~ 7033932 (+) False LOC120558791
XM_039800056.1 mRNA upstream 148333 6869579 ~ 6934548 (+) False LOC120558795
XM_039800057.1 mRNA upstream 148333 6892642 ~ 6934548 (+) False LOC120558795
XM_039799658.1 mRNA downstream 43550 7126624 ~ 7135842 (+) True LOC120558603
XM_039800063.1 mRNA downstream 60714 7143788 ~ 7149386 (+) True LOC120558799
XM_039799659.1 mRNA downstream 89287 7172361 ~ 7180197 (+) True LOC120558604
XM_039800054.1 mRNA downstream 178628 7261702 ~ 7266435 (+) True LOC120558794
XM_039800058.1 mRNA downstream 188344 7271418 ~ 7279008 (+) True LOC120558796
TU63466 other upstream 376994 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 882287 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3570397 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3799711 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4312428 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 1029367 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1259677 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1259844 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1259844 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1285569 8368643 ~ 8380578 (+) False pkig

Expression Profile