RNA id: XR_005639187.1


Basic Information

Item Value
RNA id XR_005639187.1
length 424
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id LOC120558804
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6979556 ~ 6981039 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTTCTTCTACAAAAGAGGACTAATCACTCTGATGGTTCAAACCAGAGAGGAAACACAGACATCACCAGGACTGAGATTAACATCTATGAGAACTGCCCTCCACTCTCCACCCGTGCAGACTCCACCTACCAGAGTCTGGATCCAGCCTCCAGGGATCCAGACCACATCTACTCTACTCTCTCTTAGATACAACACCTATGATGATGTCAGCAAGAGTTTCTGCTGAATGCACAGCGAAGCTTGGCTGCTGCTCATGGCAGTGAAGGATTTTATTACCAACCAGAAGCGTTTCTAGGACTTGAGGAGGTTCAGGACTTAGCCCGGAcccatttaaaggaacacgccgacttattgggactttagcttattcaccgtatcccccagagttagacagagtagaagtccatacatacccttctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63509 lncRNA upstream 11885 6963692 ~ 6967671 (+) True G47531
TU63479 lncRNA upstream 63576 6833171 ~ 6915980 (+) True G47516
XR_005639202.1 lncRNA upstream 90420 6871693 ~ 6889136 (+) True LOC120558815
TU63493 lncRNA upstream 104438 6874509 ~ 6875118 (+) True G47522
TU63469 lncRNA upstream 254358 6722739 ~ 6725198 (+) True G47508
TU63521 lncRNA downstream 376 6981415 ~ 7138886 (+) True G47536
XR_005639190.1 lncRNA downstream 9696 6990735 ~ 6993172 (+) False LOC120558806
XR_005639189.1 lncRNA downstream 10504 6991543 ~ 6993172 (+) True LOC120558806
XR_005639201.1 lncRNA downstream 19512 7000551 ~ 7001713 (+) True LOC120558814
TU63528 lncRNA downstream 81028 7062067 ~ 7063606 (+) True G47543
XM_039800056.1 mRNA upstream 45008 6869579 ~ 6934548 (+) False LOC120558795
XM_039800057.1 mRNA upstream 45008 6892642 ~ 6934548 (+) False LOC120558795
XM_039800055.1 mRNA upstream 45008 6918234 ~ 6934548 (+) True LOC120558795
XM_039800061.1 mRNA upstream 115608 6855177 ~ 6863948 (+) False LOC120558797
XM_039800048.1 mRNA downstream 46038 7027077 ~ 7066173 (+) False LOC120558791
XM_039800049.1 mRNA downstream 46041 7027080 ~ 7033932 (+) False LOC120558791
XM_039800047.1 mRNA downstream 56608 7037647 ~ 7066173 (+) True LOC120558791
XM_039799658.1 mRNA downstream 145585 7126624 ~ 7135842 (+) True LOC120558603
XM_039800063.1 mRNA downstream 162749 7143788 ~ 7149386 (+) True LOC120558799
TU63466 other upstream 273669 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 778962 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3467072 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3696386 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4209103 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 1131402 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1361712 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1361879 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1361879 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1387604 8368643 ~ 8380578 (+) False pkig

Expression Profile