RNA id: XR_005639202.1


Basic Information

Item Value
RNA id XR_005639202.1
length 469
lncRNA type intronic
GC content 0.48
exon number 3
gene id LOC120558815
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6871693 ~ 6889136 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggcagactggtggtgagacaaagaactgcttcacgcCTATGACCAGGTTGCAGTTTTCTCATTGGTCGTCGGtccttgaatgcaccacccgccactaggaggcggagggAGGATAAAAGCTGTTGGGCGTGTGTTTTCTTAGCTTTTCCACCGTGACTCACGTCGCAATAGGAAGcactctagtccggactagtAAACTAGAAAACCAGCATCATCTTGCTGGCCGAGTTTCGAGCTGGTACAAAGTATATtggcctgatatacaaaggggatccgaggaaatactttgtcgaagtattccttcatctgcagcgggcttaatcagcctggatttaaGAAAAGGactgttctttttcttgtttggtCGACCTGGAATCCGTTTTTCGTTCTTTTGCTCCGGACGAAACGGATTGTTAAGCTCTGGCCAAGAGACTTAACTGACAGACAACGCACAtggAAGATCAGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU63469 lncRNA upstream 146495 6722739 ~ 6725198 (+) True G47508
TU63463 lncRNA upstream 150021 6646655 ~ 6721672 (+) False G47504
TU63465 lncRNA upstream 150021 6696577 ~ 6721672 (+) True G47504
TU63461 lncRNA upstream 182979 6632869 ~ 6688714 (+) True G47503
TU63438 lncRNA upstream 443695 6427468 ~ 6427998 (+) True G47482
TU63509 lncRNA downstream 74556 6963692 ~ 6967671 (+) True G47531
XR_005639187.1 lncRNA downstream 90420 6979556 ~ 6981039 (+) True LOC120558804
TU63521 lncRNA downstream 92279 6981415 ~ 7138886 (+) True G47536
XR_005639190.1 lncRNA downstream 101599 6990735 ~ 6993172 (+) False LOC120558806
XR_005639189.1 lncRNA downstream 102407 6991543 ~ 6993172 (+) True LOC120558806
XM_039800059.1 mRNA upstream 7745 6855177 ~ 6863948 (+) True LOC120558797
XM_039800060.1 mRNA upstream 7745 6855177 ~ 6863948 (+) False LOC120558797
XM_039800061.1 mRNA upstream 7745 6855177 ~ 6863948 (+) False LOC120558797
XM_039800062.1 mRNA upstream 8012 6855177 ~ 6863681 (+) False LOC120558797
XM_039800794.1 mRNA upstream 97591 6729702 ~ 6774102 (+) True cables2b
XM_039800057.1 mRNA downstream 3506 6892642 ~ 6934548 (+) False LOC120558795
XM_039800055.1 mRNA downstream 29098 6918234 ~ 6934548 (+) True LOC120558795
XM_039800048.1 mRNA downstream 137941 7027077 ~ 7066173 (+) False LOC120558791
XM_039800049.1 mRNA downstream 137944 7027080 ~ 7033932 (+) False LOC120558791
XM_039800047.1 mRNA downstream 148511 7037647 ~ 7066173 (+) True LOC120558791
TU63466 other upstream 165806 6698011 ~ 6705887 (+) False ccm2l
TU63394 other upstream 671099 6199046 ~ 6200594 (+) True G47444
XR_005639245.1 other upstream 3359209 3505308 ~ 3512484 (+) False LOC120559404
XR_005639249.1 other upstream 3588523 3279361 ~ 3283170 (+) False LOC120559414
TU62381 other upstream 4101240 2745898 ~ 2770453 (+) True G46574
TU63965 other downstream 1223305 8112441 ~ 8116228 (+) True G47903
TU64119 other downstream 1453615 8342751 ~ 8380392 (+) False pkig
TU64120 other downstream 1453782 8342918 ~ 8380578 (+) False pkig
TU64124 other downstream 1453782 8342918 ~ 8380392 (+) False pkig
TU64121 other downstream 1479507 8368643 ~ 8380578 (+) False pkig

Expression Profile