RNA id: unassigned_transcript_224


Basic Information

Item Value
RNA id unassigned_transcript_224
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_14
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12223567 ~ 12223638 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGccgcggcccgggttcgattcccggtCAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU65564 lncRNA upstream 513 12220013 ~ 12223054 (+) True G49106
TU65559 lncRNA upstream 11052 12211744 ~ 12212515 (+) True G49105
TU65544 lncRNA upstream 77041 12146204 ~ 12146526 (+) True G49094
TU65536 lncRNA upstream 81040 12142142 ~ 12142527 (+) True G49086
TU65499 lncRNA upstream 132844 12090255 ~ 12090723 (+) False xkr5l
TU65594 lncRNA downstream 28805 12252443 ~ 12253795 (+) False LOC120559657
TU65598 lncRNA downstream 79016 12302654 ~ 12303403 (+) False si:dkey-70p6.1
TU65626 lncRNA downstream 140455 12364093 ~ 12364441 (+) True G49157
TU65700 lncRNA downstream 246812 12470450 ~ 12472272 (+) True G49221
TU65703 lncRNA downstream 250449 12474087 ~ 12476025 (+) True G49223
XM_039801835.1 mRNA upstream 13158 12182209 ~ 12210409 (+) True nol4la
XM_039799909.1 mRNA upstream 81765 12129836 ~ 12141802 (+) True LOC120558724
XM_039801027.1 mRNA upstream 119668 12092821 ~ 12103899 (+) True LOC120559364
XM_039799251.1 mRNA upstream 132794 12084452 ~ 12090773 (+) True xkr5l
XM_039799949.1 mRNA upstream 140725 12068413 ~ 12082842 (+) True rap1aa
XM_039801555.1 mRNA downstream 17408 12241046 ~ 12243801 (+) True LOC120559656
XM_039801556.1 mRNA downstream 17408 12241046 ~ 12243801 (+) False LOC120559656
XM_039801557.1 mRNA downstream 22007 12245645 ~ 12254060 (+) True LOC120559657
XM_039801781.1 mRNA downstream 59789 12283427 ~ 12303238 (+) True si:dkey-70p6.1
XM_039801782.1 mRNA downstream 59789 12283427 ~ 12303238 (+) False si:dkey-70p6.1
XR_005639365.1 other upstream 13158 12182209 ~ 12210409 (+) False nol4la
TU65506 other upstream 126730 12092779 ~ 12096837 (+) False LOC120559364
TU65120 other upstream 907575 11314662 ~ 11315992 (+) True G48765
TU65107 other upstream 1049913 11172595 ~ 11173654 (+) True G48752
TU64964 other upstream 1520186 10614031 ~ 10703381 (+) False G48640
TU65687 other downstream 228897 12452535 ~ 12458439 (+) True G49209
XR_005639089.1 other downstream 428972 12652610 ~ 12658308 (+) False LOC120558314
XR_005639216.1 other downstream 637083 12860721 ~ 12884287 (+) False LOC120559134
TU66161 other downstream 1308752 13532390 ~ 13534922 (+) True G49538
TU66274 other downstream 1889412 14113050 ~ 14121022 (+) False hmga1a