RNA id: unassigned_transcript_225


Basic Information

Item Value
RNA id unassigned_transcript_225
length 73
RNA type tRNA
GC content 0.62
exon number 1
gene id trnak-cuu
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15012895 ~ 15012967 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCGgctagctcagtcggtagagcatGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCCCCACGTTGGGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU66668 lncRNA upstream 42092 14902916 ~ 14970803 (+) False G49883
TU66661 lncRNA upstream 58505 14902916 ~ 14954390 (+) True G49883
TU66663 lncRNA upstream 75435 14902916 ~ 14937460 (+) False G49883
TU66528 lncRNA upstream 422119 14585449 ~ 14590776 (+) True G49778
TU66525 lncRNA upstream 443298 14568325 ~ 14569597 (+) True G49775
XR_005639237.1 lncRNA downstream 194775 15207742 ~ 15241127 (+) True LOC120559279
TU66801 lncRNA downstream 263146 15276113 ~ 15276360 (+) True G50002
TU66802 lncRNA downstream 264479 15277446 ~ 15277646 (+) True G50003
TU66813 lncRNA downstream 409352 15422319 ~ 15422608 (+) True G50014
TU66810 lncRNA downstream 624516 15637483 ~ 15639301 (+) True G50011
XM_039799286.1 mRNA upstream 110370 14900650 ~ 14902525 (+) True mipb
XM_039801263.1 mRNA upstream 114788 14892057 ~ 14898107 (+) True LOC120559525
XM_039801264.1 mRNA upstream 114788 14892057 ~ 14898107 (+) False LOC120559525
XM_039801261.1 mRNA upstream 114788 14892172 ~ 14898107 (+) False LOC120559525
XM_039799926.1 mRNA upstream 124764 14868908 ~ 14888131 (+) True baz2a
XM_039801156.1 mRNA downstream 2427 15015394 ~ 15032560 (+) True LOC120559459
XM_039801157.1 mRNA downstream 4352 15017319 ~ 15032560 (+) False LOC120559459
XM_039801158.1 mRNA downstream 4869 15017836 ~ 15032560 (+) False LOC120559459
XM_039801152.1 mRNA downstream 5626 15018593 ~ 15032560 (+) False LOC120559459
XM_039801151.1 mRNA downstream 5662 15018629 ~ 15032560 (+) False LOC120559459
XR_005639381.1 other upstream 159268 14853554 ~ 14853627 (+) True LOC120559926
XR_005639382.1 other upstream 160426 14852396 ~ 14852469 (+) True LOC120559927
TU66526 other upstream 435323 14574542 ~ 14577572 (+) True G49776
TU66523 other upstream 445439 14564867 ~ 14567456 (+) True G49773
TU66273 other upstream 891873 14113268 ~ 14121022 (+) False hmga1a
XR_005639300.1 other downstream 759250 15772217 ~ 15798957 (+) False zmp:0000000926
TU66854 other downstream 850945 15863912 ~ 15867369 (+) False G50045
TU67106 other downstream 1362341 16375308 ~ 16379644 (+) False LOC120559119
TU67110 other downstream 1362341 16375308 ~ 16377489 (+) False LOC120559119
XR_005639214.1 other downstream 1367077 16380044 ~ 16394232 (+) False brpf1

Expression Profile