RNA id: XM_039804283.1


Basic Information

Item Value
RNA id XM_039804283.1
length 8942
RNA type mRNA
GC content 0.50
exon number 49
gene id abca2
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 11285385 ~ 11593660 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAATTCAGAGGGATTTTGGCCAGGCCGGAAGTGTACGTTTTCATTACTCGGGTTAGCTTAATATCAGGCTGTGCCCACTGGTTTCCTGCTCCAACCCAGACCACTGCACTGCACTGCTAAACTTAACGGATTCCGTAGGAGAAGCTACCCGGAGCACCACTATACATCCATGCcactgacacagacagacagaggatgaTAGACGGCACATAACAGTCCCGTTACGACTTTTCCTGCCAGTCACTAGCAAATAGGCGTTCTTCAACTAActgagtaacgttaacgttagcttaataTTATTCATTATTAGCCAGCCCGACGCATTTCAGCACCATTACAGGCTCGGACGGGATGCCTGCAACGGGACAGAATTTACCCGGTTATTTAAATCCAGTCCTAGGCCACCGCACGTTATGCTAGTTTTGTAAATGTAATGACATACTGAAGCAGAAGTGGGAGGCAAAATGGGATTCCTGCATCAGCTCCATCTCCTGCTGTGGAAGAACATCTCACTGAAAAGGAGGAGTCCGTGGGTGCTGGCCTTTGAGATCTTCATCCCACTGgtcctcttcttcatcctcttgGGTCTGAGGCAGAAGAAGCCAGCGATTCCTGTCAAGGAAGTGTCCTTTTACAGCGCAGCCCCACTCACCTCGGCTGGCATTATTCCCATCATGCAGTCGCTATGCCCAGATGGACAAAGGGATGAATTTGGTTTCCTTCAGTACAAGAACTCCACTGTGACCCAGCTGCTGGAGCGGATCAGTGAAGTGGTTGAACAGAATCGCCTCTTCACGTCTGACCGGCCTGGTTTGGGTCATGAGCTTGAGACCCTGCAGCAGCACCTAGAGAGTCTCAGCTCAACCCATTTACCACCGGACTACAACACCAgctttACGCTGGCCAGTGTCTTGAAGAACCAGTCGGTTTTCCAGCAGTTCCTGGTTAAGAACCTTTCCCTGTCCAACTCCACAACCAGCCTGTTGCTCAACACTCCAGTCAACCTCAGAGAGGTGTACAGTCTTATCTTTGTTTCATCTCTCAGAGATGGAGGAGGGACCCAAAGTTGGATTCAGGGGGCAAAAGGCACCAGAAAAAAACCTGGAGACAGTGTTCATCTGGAGGGGGCCCTCCTGACTGGAACTCTGCTGGAGATCCTCACCTGTGGGCAGGGCAGGGCCAATAAGCTCAGTAAGATCCTGTTGGTGCCTGAGAAGCAGGGACCATTGCTGCAGGCCTATCGCAGCACAGTGTGCAGCGGAGGggagggtcaaaggtcagagcgCTTCAGGCTGATGAGCCTCGAACTGAGAGAACAGATCAACACACAGAGTGTCACTGAGAAGCTTCACCTGGAACAGCCCAACTCTGTGGTTTCGCTCTCTCAGTCCAACCTCTGGGCCCTATTGAAAGACCTGGCTGATGTAGAGAGGCTCCTCAAAGATGTGGACCTGCTCTCTGGCCTGGCCCGCCTGCTGCCCAAAGGAGCCTGTACTGGTCGAACTCCAGCCTTCCACACAAACATAACCTGGCCCCTTAACAACACCACCTGGGGCCCTAACATGACTGACATCCctggagagaaaggggaggaagGAGCAGAGCGAGGTGGAGGAGCAGGAGAagggaaagagaaggaggaagcAGAGAACCCTCACTCTCAGTTTTCAGCATTTGTACAACTGTGGGCCGGACTGCAGCCGATTCTGTGTGGGCACAACAGGATCATTGAGCCAGAGGCTTTGAAGCAGGGGAATATGAGTTCGCTGGGATTCACCAACAAAGAACAGAGGAATCTGGGCCTACTGGTTCACTTGATGACAAAAAATCCCAAGATCCTCTACTCCCCCATTGGATCCCAGGTTGATAAAGTGATTCAGAAGGCAAATGAGACATTTGCATTCGTCGGTAACGTGACACACTACACCCAGGTGTGGCTCAACATCTCCGCCCAGCTCAGGGCTTTTCTGGAGGCCGGCCAGCTGCACAACCACCTGGTGTGGCTACAGCAGCTGTCCTCAGAGCTTCAGCAGCACCCTGAGTTGTTGAATGACTCCGACAGCGAGCTGATGCAGGGCCTGATGGAGGGAAACTACAGTCTTCCTAACATCTCCACCCTGCTGGAGCAGCTTGACACCATTGACAACGCTGCCTGCGGCTGGATGCGCTTCATGTCTAAGGTCAGTGTGGATGTCTTCAAGGGCTTTCCTGACGAGGACAGCATTGTCAACTACACCCTAAACCAGGCCTACCAGGACAACGTGTCTGTGTTTGCCAgtgtGATTTTCCAGACTAACAAAGATGGCTCCCTGCCACCCCATGTTCTGTATAAAATTAGACAAAACTCCAGCTTTACAGAGAAGACCAATGAAATCAGACGAGCCTACTGGCGTCCTGGGCCCAACATCGGGGGGAAATTCTACTTCCTCTATGGTTTTGTTTGGATCCAAGATATGATAGAGAGAGCCATCATCAACACGTTTGTAGGCCATGATGTGGTGGAGCCTGGTAACTACGTTCAGATGTTCCCCTACCCATGTTACACCAGAGATGAttttCTGTTTGTGATCGAGCACATGATGCCTCTGTGCATGGTCATCTCCTGGGTTTACTCAGTAGCCATGATGATTCAGCACATTGTCGCTGAGAAGGAGCAACGGCTCAAAGAGgtgatgaagatgatggGTCTAAACAATGCTGTTCACTGGGTGGCTTGGTTTATCACTGGCTTCGTCCAGCTGTCCATCTCCGTTACAGCTCTGACGGCCATCTTGAAGTATGGCCGGGTGTTGCTCCACAGTGACCCCTTCATTATCTGGCTCTTCCTCACCATCTACGCTGTGGCCACCATCATGTTCTGTTTTTTGGTGTCAGTAATCTACTCTAAGGCCAAGCTGGCTTCAGCCTGTGGAGGAATCGTCTATTTCCTAAGCTACGTGCCCTACATGTATGTGGCCATTAGAGAGGAGGTGGCCCATGATAAGATCACTGCCTTTGAGAAGTGCATCGCTTCTCTGATGTCAACCACAGCCTTTGGTCTGGGCTCCAAGTATTTTGCATTGTATGAGGTAGCAGGTGTTGGCATCCAGTGGCGGACCATCAGCCAGTCACCGGTAGAAGGCGATGACTTTAACCTGGGTCTATCCATGATGATGCTCATCATCGATGCCGGTGTGTATGGTGTGCTCACTTGGTACATAGAGGCTGTGCATCCAGGAATGTATGGGCTGCCCCGCCCATGGTACTTCCCCCTGCAGAGGTCCTATTGGTCAGGCAGTGGACGTGTCGAGACCTGGGATTGGCCATGGTGTGGAGGCGGGGCTGCCAAGCTCAGTGTGATGGAGGAGGATCAGGCTTGTGCAATGGACCAGCGGAGATCTGAGGAGATGCGGGGCATGGAGGAGGAGCCAAGCCACTTGTCGTTGGTGGTCTGTATAGACAAACTGACCAAGGTGTACAAGACTGGCAGCAAACTGGCCCTCAACAAACTAAGCCTCAACCTCCATGAAAACCAGGTAGTCTCCTTCCTGGGACACAACGGCGCTGGCAAGACCACGACCATGTCCATCCTGACAGGCTTGTTCCCGCCGACCTCTGGCTCTGCCACCATATATGGTCATGACATCCGCACAGAGATGGAGCGGATTCGTCAGAACCTGGGCATGTGTCCACAGCACAATGTCCTGTTTGACAAGCTGAGTGTGGAGGAGCACCTGTGGTTCTACTCCAGACTTAAAGGCATGGCTGAAGAAGACTTACGCAAGGAAATGGACAAGATGATTCTTGACCTGGAGTTAACCCACAAGCGCCACAGTTTGGTGCAGACTCTGTCCGGCGGGATGAAAAGGAAGCTGTCCGTGGCCATCGCCTTCATTGGCGGCTCCAGAGCTGTCATCCTGGATGAACCCACAGCAGGGGTGGACCCCTACGCTCGCAGGGCCATCTGGGACCTTATCCTCAAGTACAAACAGGGCCGTACAATTCTGCTGTCCACCCACCATATGGATGAAGCAGACCTTCTGGGAGATCGCATTGCTATCATCTCACATGGGAAACTCAAGTGCTGTGGCTCGCCGCTCTTCCTGAAGAGCACCTACGGAGACGGATACAAACTGACACTTGTCAAAAAGCAGAGTGAAGGCAGAGAAGCTCGCGTCACCCAGTTTATTTGCCAGTTTGTGGCGTCCTGTCTGCTGGTGTCCGATTCTAACACTGAGCTGTCCTACGTCCTGCCCTCCGAGGCCGTCAAGAAGGGCTGCTTCGAGAGGCTGTTCCagGCTTTAGAGGAGAGCTTGGACAGCCTGGCCCTTACCAGCTTCGGAGTGATGGACACTACCCTAGAGGAGGTTTTTCTCAAAGTGTCTGAGGAGGACCAGTCACTGGAGAACAGTGATTCTGATGCGGACATGAAGGTTTCCCCAGGGGGCAGCTCACTGGGGAAATCCTCAGTGGCTTCAGGAGACCTGGGGGTGCCACAGAGTGGACCTTCAGTAGAGAGTGAGAAGCCGGAAGTGGAGCTGAGTAATCTGCTGATGTGCTCCAGGCTTAGTCAGAGTCAGTCCTCCCTGAAATCTTCCTCGTCCATCGGCTCAGTGAGAGGGGATGAAGGGGGACTCTACGCCGACTTCTATGGAGATTATTGTCCACTCTTTGACAATGGCCAAGAGTCTGACTCAGCCAGCATGAGGGTGGATGCAGAGAACCCCTCGTCCCCAGAGCCAGAGGTACTGGAAGGGCAGGGCAGCTTCAAGTTGGAGGGTTGGTGGTTAAAGCTAGGTCAGTTTCATGGCCTCATCATCAAGAGGTTCCACTGTGCCAAGAGGAACACTAAGGGCCTCTTCTCTCAGATCCTCCTGCCTGCCTTCTTCGTCTGTGTGGCCATGACTGTGGCCTTATCTGTGCCTGAGATTGGAGATTTGCCACCCCTGATCTTGTCCCCATCTCAGTATCATAACTATACGCAACCTAGAGGCAACTTCATTCCTTATGCCAACGAAGACAGACCCCAGTACAGGAGCAAGCTGTCACCAGATGCCAACCCACAAAAGATCATCAACACCCTCCGTCTGCCCTCGGGCGTGGGTGCTACCTGCGTCCTTAAAACCCCCTTCAACAGCACCCTGGACCAACTGGCTCAGACCCTTAACCCCAGTGCCAACAACTCCAAGACCCTGGCTGCCCGCTACTTTGACTCCATGTGTCTGGACTCCTTCACTCAGGGGGTCCCCCTCTCGAACTTTGTACCCCCACCTCCTTCACCGGCACCTTCAGATGACCCAGATCCTCGCTTTGAGGATGGACTGTGGAACTTCACAGTCGCCCCTCCAACAACAGTTAATGAACCTGTGACATCTTCTCCAACCCTCCCCCTGTCTATCCATGAGCCGGTGCGTTGTACCTGCTCCATGCAGGGGACAGGCTTCTCTTGCCCCAGTGGGGTGGGAGGACGGCCCCCTCTCATGAAGGTGGTGACAGGTGACATCGTGGTGGACATCACAGGCAGGAATGTCTCTGAGTACCTGCTTTTCACATCAGACAGGCTGCGCCTGCACAGATATGGTGGTTTAACAGTGGGGAACATCCAGAAATCAATCCCAGCATCCTTTGGGAGAAAGATACCTACAATCGTTCGCAAGATAGCAGTTCGTAGATTAGCTCAGGTTCTATACAACAACAAAGGTTACCACAGCATGCCGACTTATCTGAATGTCCTCAACAACGCCATCCTACGTGCCAACCTGCCTGCATCCAAGGGCAACCCTGCTGCCTATGGCTTCACACTGACAAACCACCCAATGAATCGAACCAGTGCCAGCCTCTCTTTGGACTACCTGCTCCAGGGAACAGACGTGGTGATTGCCATCTTCATTATTGTAGCCATGTCCTTTGTGCCAGCCAGCTTTGtggttttcttggttgcagaGAAATCCACGAAGGCCAAACACCTACAGTTTGTCAGCGGCTGTGACCCTGTCATCTACTGGCTGGCTAATTACATATGGGACATGCTGAACTACCTGGTACCTGCCACATGCTGTGTTAttattctgtttgtgtttgaccTGCCGGCCTACACCTCCCCAACTAACTTCCCTGCTGTCCTCTCGCTCTTTCTTCTCTACGGGTGGTCCATCACTCCCATCATGTACCCAGCATCCTTCTGGTTCGAGGTGCCCAGTACAGCCTATGTGTTCCTCATAGTCATCAACCTCTTCATAGGCATCACTGCAACTGTTGCCACTTTCCTACTCCAGCTCTTTGAACATGATAAGGATCTAAAAAAAGTCAACAGTTACCTGAAGTCCTGTTTCCTTATCTTCCCCAACTACAACCTGGGCCATGGCCTGATGGAGATGGCGTACAATGAGTACATCAATGAATACTACGCTAAAATAGgcCAGTTTGACAAGATGAAGTCTCCATTTGAGTGGGACATTGTGACCCGAGGACTAGTTGCCATGACAATCGAAGGCTTTGTTGGCTTTCTCATTACCATCCTCTGCCAGTACAACTTCCTCAGGAAACCCACgAGGGTGCCAGTCAGCTGCCAGCCTATAGACGATGATGATGTAGACGTGGCTTGTGAAAGACGAAGGGTGTTGCAAGGAGACGCTGACAACGACATGCTGAAGATCGAGAACCTTACAAAGGTGTATAAATGCAGGAAGATGGGTCATATCCTGGCAGTGGACCGGCTGTGTCTTGGTGTCCGGCCTGGTGAGTGTTTCGGACTGCTAGGAGTAAATGGAGCCGGAAAGACTACCACCTTCAAGATGCTAACTGGAGATGAGTGCACCACTGGAGGAGAGGCCTTCATCGATGGAAACAGtatccTGAAGGACCTTTTACGTGTGCAGCAGAGTATCGGCTACTGTCCCCAGTTTGACGCTCTGTTTGATGACCTGACAGCCAGGGAACATCTGGAGCTTTATACTCGCCTCCGTGGCATTCCCTGGAAAGACCAGGAAAGGGTGGTGAAGTGGGCATTAGAAAAACTGGAATTGTCAAAGTATGCAGACAAGCCTGCTGGAACTTACAGTGGAGGAAACAAACGCAAGCTTTCCACTGCCATCGCTCTGATTGGATATCCCTCACTCATCTTCCTTGATGAACCCACCACTGGCATGGACCCAAAGGCCCGCAGATTTCTCTGGAACTTAATCCTGGACGTTATAAAGACTGGACGCTCAGTAGTGCTGACAtcacacagCATGGAAGAGTGTGAGGCTTTGTGCACCAGATTGGGCATTATGGTCAACGGCAGGTTTAAATGTCTGGGCAGCATCCAACATCTCAAGAACAGGTTTGGGGATGGCTACATGATCACAGTGAGGACCAAGAGCAGCTCGAATCTGAAGGAGGTGGTTAGATTCTTCAACAGAAACTTCCCCGAGGCCGTACTAAAGGAGCGTCACCACACCAAGGTCCAGTACCAGTTGAAGTCTGAGCGGATCTCACTGGCTCAGGTCTTCAGTAAGATGGAGCAGGTGGTGGAGGTGCTGGGCATCGAGGACTACTCTGTCAGTCAGACCACTCTGGACAATGTTTTTGTCAACTTTGCCAAGAAGCAGAGTGACAATCTGGAGCAGCAGGAGACAACGTCCTCAGGTAGTGGACAGTCCCCCCTGCAGCGCATCCTCAACCTGCTGAAGTCTCGGCCTGCCAACACAGAGCTCAATGCTCTGATCAGCGAGGCACCAGAGGAACTGGAGAGTGACGATGATGAAGGACTCATCAGCTTCGAAGAGGAAAGGgTGCAGCTCTCCTTCAACACAGACACTCTCTGTTAAAATGAGCCCCTTCAAAAGAGCAGAAGAGAACAGCTGATTTAACCCTGAAGAGGATCAAACCTCTCTGCACCATGGAACATAGGACCAGTAATTCAGTATTTCAGCCTCAATTTTTTATTCAGGAGGGACTGAGGTGGTTTAGGTCAGATCATACAGACAGAGGTGATAACGTACAGAGTCCAGCTTGTAGGTAGAGGCAGGAGTGCTTGTATTTGGATTGAAGACTTTGTCCTGGAatgttttcatatttatttttgttgagaATGTATCTTATTAAATGGATGATTAATACAATAGGTTAGCTACTTTTGTTAGTAAATGAACATATCATTGGTGATATGTTAAAAACCAAGTGTTTGACAGCAGGGGTTACTTTGAGTTGGTTGTACTCCCAACCAAAAGGCCTCATGACACCAGAGTGGGCCATTGTCACTGTACCAAATTAGACCTGCCTTGAGAGCATGCTGTGATGAAGTTGATACCCATTGGTAACGCTGGTAATACAGTCTATTTTTCTCTGGcaagaaaaataatttatttggaTATCAAAGCAGATGATGTGTGTGATTTATTTTGCAATAACAGAGGATTTAGTGATACATCTGGCAAGATGTGGACATGCATGCTGTTGGCCTTTTCTTTTAACTTGAAGAGAATGTACATGGCACGTTATTGTCTTGATGGTGTCTCCCCTCTATCAACTTGTTTGAAACTGTACATTTGGTCTCTTTCTATTAAATACTCTCTTTTGTTCTTTTAACATATTATTATGTTGTGGACTCTGCCAAGAAGATCCTCTACCGGACAcagtgtataataataataataataataataataataatctaatagTGTGAAACTGCAGTGAACTCTGCTTATATTCCCTGACAATAACTGCACTACCATCACTGTGAAGGGAACTCTCAGATCAGAATAATCTATTGACTACAatacatgttttattatttgcagaTGTATTTGTAATGTGATAGTTGAGTTGTAacctgtcctgtcaaaaataactGTTTCATTACTTCTTTCACAGCTAATTGCAGTTATATTTTTGGTGACTATTATGGCACTGGTGGGGTGTTTACTGATACTGTTAATTGAAGGGGTTATCATTAAACACGGAAAACTgacttgtaa

Function

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81439 lncRNA downstream 77472 11207608 ~ 11207913 (-) True G60721
XR_005639424.1 lncRNA downstream 162477 11122553 ~ 11122908 (-) True LOC120560099
TU81389 lncRNA downstream 164583 11119850 ~ 11120802 (-) True G60683
TU81386 lncRNA downstream 172726 11107551 ~ 11112659 (-) True G60680
TU81359 lncRNA downstream 304629 10980417 ~ 10980756 (-) True G60655
TU81548 lncRNA upstream 10175 11564778 ~ 11593660 (-) False abca2
TU81552 lncRNA upstream 17349 11571952 ~ 11576716 (-) True G60817
TU81595 lncRNA upstream 169246 11723849 ~ 11724069 (-) True G60857
TU81596 lncRNA upstream 173928 11728531 ~ 11766055 (-) True G60858
TU81599 lncRNA upstream 215089 11769692 ~ 11779622 (-) True G60861
XM_039804329.1 mRNA downstream 116058 11160449 ~ 11169327 (-) True sdf2l1
XM_039803630.1 mRNA downstream 193423 10986105 ~ 11091962 (-) False top3b
XM_039803629.1 mRNA downstream 193448 10986105 ~ 11091937 (-) True top3b
XM_039802346.1 mRNA downstream 317181 10904223 ~ 10968204 (-) False ppm1f
XM_039802347.1 mRNA downstream 317182 10901946 ~ 10968203 (-) True ppm1f
XM_039802866.1 mRNA upstream 54016 11608619 ~ 11639438 (-) False npdc1b
XM_039802865.1 mRNA upstream 54016 11608619 ~ 11639438 (-) True npdc1b
XM_039802867.1 mRNA upstream 87199 11641802 ~ 11715948 (-) True niban2b
XM_039803942.1 mRNA upstream 347047 11901650 ~ 12061646 (-) False LOC120561001
XM_039803941.1 mRNA upstream 347047 11901650 ~ 12061646 (-) True LOC120561001
TU81433 other downstream 95644 11189142 ~ 11189741 (-) True G60715
TU80745 other downstream 2882819 8401022 ~ 8402566 (-) True G60145
TU80531 other downstream 3397982 7879424 ~ 7887403 (-) False anapc7
TU80421 other downstream 3700866 7584086 ~ 7584519 (-) True G59881
unassigned_transcript_243 other downstream 3774094 7511221 ~ 7511291 (-) True trnag-ccc
TU82089 other upstream 2034436 13589039 ~ 13589332 (-) True G61264
unassigned_transcript_252 other upstream 3384372 14938975 ~ 14939047 (-) True trnaa-agc_14
unassigned_transcript_253 other upstream 3389893 14944496 ~ 14944568 (-) True trnaa-agc_15
unassigned_transcript_254 other upstream 3394156 14948759 ~ 14948830 (-) True trnae-cuc_15
unassigned_transcript_255 other upstream 3396899 14951502 ~ 14951583 (-) True trnas-gcu

Expression Profile