RNA id: TU82830



Basic Information


Item Value
RNA id TU82830
length 548
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G61837
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 15425551 ~ 15427495 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CTGGCCGGCTGCACCACAGCTAATGTAGCCAGATATCATCTATGCTACTCTCATAGGTGCACGTTGTAATACATTATGTAGAAATGTTACAGGTCGTGAAAGAATAAAtctaattttaaaaataaattcagTCCATCTCTCAGCCCTACCGGAAAATGAGGTAAACGTGAAGTCCATATACTTACAAAGAGTATTTCAGAGTGTCGTCCAGTTCCATGATGGCTGCCTGGTTTCCACAGCGGTAACAGTAGTTTGGAGCACTAAAGATGGTCACCACATTCTTATCATGGCCCCAGTTGTAGCCCTCCATGACCAGCTGATGGGCGCGGGACACCAGAGTGAGGCCGTTGGCGTGGTTAAAGGTTTCAGAGATGTCCTGTCCGAAGGTGTAGCCGGCACCTCGGGGAGAGATGCCCCACCCACCACGATCATCAGGGTCTGACCACAGCAGGTCACACATCGGGCCTCATGTGGGACTTCTTGCAGGCGGTCCAGAGCGCGTATGTGATCCAGAGTGTCTATGGAGGGAGACAAACCTCCGTGGAGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU82801 lncRNA downstream 119484 15303729 ~ 15306067 (-) True G61813
TU82799 lncRNA downstream 171646 15252693 ~ 15253905 (-) False mfsd14bb
TU82716 lncRNA downstream 245132 15152994 ~ 15180419 (-) True G61742
TU82713 lncRNA downstream 295588 15106265 ~ 15129963 (-) True G61740
TU82676 lncRNA downstream 356658 15068542 ~ 15068893 (-) True G61711
TU82900 lncRNA upstream 31338 15458833 ~ 15462921 (-) True G61894
XR_005639525.1 lncRNA upstream 114337 15541832 ~ 15544351 (-) True LOC120560849
TU82980 lncRNA upstream 346184 15773679 ~ 15777138 (-) True G61956
TU83024 lncRNA upstream 510481 15937976 ~ 15939248 (-) True G61993
TU83027 lncRNA upstream 555381 15982876 ~ 15983411 (-) True G61996
XM_039803722.1 mRNA downstream 10092 15409196 ~ 15415459 (-) True srp19
XM_039803721.1 mRNA downstream 17250 15403848 ~ 15408301 (-) True rsph14
XM_039803719.1 mRNA downstream 23227 15369026 ~ 15402324 (-) False LOC120560838
XM_039803715.1 mRNA downstream 23227 15369026 ~ 15402324 (-) False LOC120560838
XM_039803718.1 mRNA downstream 23227 15369026 ~ 15402324 (-) False LOC120560838
XM_039803727.1 mRNA upstream 44575 15472070 ~ 15502444 (-) True LOC120560845
XM_039803729.1 mRNA upstream 76879 15504374 ~ 15514901 (-) True LOC120560846
XM_039803731.1 mRNA upstream 142204 15569699 ~ 15577254 (-) True LOC120560851
XM_039803732.1 mRNA upstream 153797 15581292 ~ 15590436 (-) True LOC120560852
XM_039803733.1 mRNA upstream 163850 15591345 ~ 15602271 (-) False LOC120560853
XR_005639521.1 other downstream 23227 15369827 ~ 15402324 (-) False LOC120560838
XR_005639520.1 other downstream 23227 15369827 ~ 15402324 (-) False LOC120560838
TU82789 other downstream 192862 15225095 ~ 15232689 (-) False LOC120560831
TU82785 other downstream 207142 15216550 ~ 15218409 (-) False sdhaf1
TU82671 other downstream 384187 15036979 ~ 15041364 (-) False tti2
TU83104 other upstream 1077131 16504626 ~ 16505067 (-) True G62064
TU83119 other upstream 1121127 16548622 ~ 16550256 (-) False LOC120561322
TU83120 other upstream 1121127 16548622 ~ 16551175 (-) False LOC120561322
TU83121 other upstream 1121127 16548622 ~ 16550256 (-) False LOC120561322
TU83278 other upstream 1696501 17123996 ~ 17124477 (-) True G62194

Expression Profile