RNA id: TCONS_00075000


Basic Information

Item Value
RNA id TCONS_00075000
length 788
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id XLOC_037958
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 32761062 ~ 32795884 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCAGATATGTCTCGCTGGTTACGTAAGATTTTGCTTTTTTTGATGGAGGCCGATTGGTTTTCAGACCAGGTCATCTAGTTCTGTTCTCAGGCACAAGCGCTTTTTGATGGGGATTTCTCCCACCCACATCTCATCAGCCTACCCACTTCCCACAGCCGTCCAGAGAGGCTGGGCAAACAAGACCCCGCGTTCTGCCAATTTGTTCGTACAAAACGTAGGGATTTGGGGGCCTACAGCCACTCTTGCACAGACAAATGGTTTCCTGCGCTGTTCCTTTCTGCAATTTGAAAACACACCAGGGTTATCAGGATCTGCATTAACATACAGAACTTTCTTTCGATGACACCACAAGGCCAAGGTTGGACTTTTGAACCTCATTTCCAACGTATCACCCCAATATAAACCAGTTTTGAAAAATGACAGAAGCAATGCAAAGGAGGAAGTACTGTAGTAAAGGGCAAATGAAGTTCAGCTGAGGTGACGGGGTGAGACGATGTGAAAGATCATGAGAGTTCATGTGTCTAATGATGGAATGCACACAGAGAGATGAAAActaatgaacacaaaagatgtaCAGAGTGAGCAGGAGAGGGAGGAAGATGGCGATGGGGCGACCGACTGGTGTTGAACTCATCTTCATCCTAATTGATGAGGTCATCCTGAGGACTATCCCAAAACCAGCCTGTCCCGGGGGGTCAACACACGGTCACCCAAAAGTCAAAGAGCATCGTAGAGAGTAAGTTTTTTTcatgttatatttttttaaaatggggttttgtcttaaatt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00074480 lncRNA downstream 455640 32316139 ~ 32316835 (-) True XLOC_037944
TCONS_00075391 lncRNA downstream 493288 32271066 ~ 32279187 (-) False XLOC_037942
TCONS_00074998 lncRNA downstream 493423 32271066 ~ 32279052 (-) False XLOC_037942
TCONS_00074999 lncRNA downstream 495303 32271066 ~ 32277172 (-) False XLOC_037942
TCONS_00075390 lncRNA downstream 507817 32262205 ~ 32264658 (-) True XLOC_037940
TCONS_00074500 lncRNA upstream 5854 32801738 ~ 32804908 (-) True XLOC_037960
TCONS_00074504 lncRNA upstream 48129 32844013 ~ 32844887 (-) False XLOC_037963
TCONS_00074505 lncRNA upstream 50270 32846154 ~ 32847484 (-) True XLOC_037963
TCONS_00075393 lncRNA upstream 141945 32937829 ~ 32941228 (-) True XLOC_037966
TCONS_00075394 lncRNA upstream 314320 33110204 ~ 33122114 (-) True XLOC_037970
TCONS_00074497 mRNA downstream 18940 32751428 ~ 32753535 (-) True XLOC_037957
TCONS_00074493 mRNA downstream 41988 32728653 ~ 32730487 (-) True XLOC_037955
TCONS_00074492 mRNA downstream 88467 32674676 ~ 32684008 (-) True XLOC_037954
TCONS_00074491 mRNA downstream 100346 32670526 ~ 32672129 (-) True XLOC_037953
TCONS_00074490 mRNA downstream 103547 32667169 ~ 32668928 (-) True XLOC_037952
TCONS_00074499 mRNA upstream 1932 32797816 ~ 32804953 (-) False XLOC_037960
TCONS_00074501 mRNA upstream 9804 32805688 ~ 32813177 (-) True XLOC_037961
TCONS_00074502 mRNA upstream 28755 32824639 ~ 32837860 (-) True XLOC_037962
TCONS_00074503 mRNA upstream 44230 32840114 ~ 32847642 (-) False XLOC_037963
TCONS_00074507 mRNA upstream 99119 32895003 ~ 32912638 (-) True XLOC_037965
TCONS_00074494 other downstream 24681 32745088 ~ 32747794 (-) False XLOC_037956
TCONS_00074496 other downstream 24710 32745944 ~ 32747765 (-) True XLOC_037956
TCONS_00074495 other downstream 24729 32745326 ~ 32747746 (-) False XLOC_037956
TCONS_00074489 other downstream 107013 32662314 ~ 32665462 (-) True XLOC_037951
TCONS_00074482 other downstream 247104 32525255 ~ 32525371 (-) True XLOC_037946
TCONS_00074506 other upstream 87407 32883291 ~ 32885181 (-) True XLOC_037964
TCONS_00074518 other upstream 451318 33247202 ~ 33249282 (-) False XLOC_037975
TCONS_00074519 other upstream 451479 33247363 ~ 33250079 (-) False XLOC_037975
TCONS_00074520 other upstream 451482 33247366 ~ 33251006 (-) False XLOC_037975
TCONS_00074521 other upstream 453394 33249278 ~ 33250994 (-) True XLOC_037975

Expression Profile

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