RNA id: TU91941


Basic Information

Item Value
RNA id TU91941
length 360
RNA type TUCP
GC content 0.43
exon number 2
gene id G68717
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 39935372 ~ 39935846 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tggagtctggtggaaatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaacgtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaacgtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacacgctaaaagtcctgattatttacatggagtctggtggagatatgctggctctatacatgctaaaagtcctgattatttacatggagtctggtgggtttg

Function

GO:

id name namespace
GO:0061008 hepaticobiliary system development biological_process
GO:0001889 liver development biological_process

KEGG:

id description
ko00120 Primary bile acid biosynthesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91923 lncRNA downstream 51738 39883045 ~ 39883634 (-) True G68706
TU91880 lncRNA downstream 421254 39513850 ~ 39514118 (-) True G68672
TU90922 lncRNA downstream 468395 39466552 ~ 39466977 (-) True G68052
TU90910 lncRNA downstream 473804 39410239 ~ 39461568 (-) False LOC120560826
TU90907 lncRNA downstream 510079 39410239 ~ 39425293 (-) True LOC120560826
TU91903 lncRNA upstream 109849 40045695 ~ 40128272 (-) True G68686
TU91960 lncRNA upstream 117256 40053102 ~ 40111807 (-) True G68730
TU91964 lncRNA upstream 132231 40068077 ~ 40110678 (-) True G68733
TU91969 lncRNA upstream 207135 40142981 ~ 40143261 (-) True G68737
TU91972 lncRNA upstream 217214 40153060 ~ 40154319 (-) True G68739
XM_039802872.1 mRNA downstream 93946 39449933 ~ 39841426 (-) True LOC120560407
XM_039803696.1 mRNA downstream 488156 39411546 ~ 39447216 (-) False LOC120560826
XM_039803762.1 mRNA downstream 540550 39366677 ~ 39394822 (-) False mn1b
XM_039803761.1 mRNA downstream 540550 39366677 ~ 39394822 (-) True mn1b
XM_039803740.1 mRNA downstream 1087419 38845687 ~ 38847953 (-) True zgc:153044
XM_039802162.1 mRNA upstream 64160 40000006 ~ 40026743 (-) True LOC120560061
XM_039802073.1 mRNA upstream 105524 40041370 ~ 40131231 (-) False LOC120559991
XM_039802071.1 mRNA upstream 105524 40041370 ~ 40131231 (-) True LOC120559991
XM_039804118.1 mRNA upstream 285683 40221529 ~ 40269220 (-) True dpysl2a
XM_039803815.1 mRNA upstream 342214 40278060 ~ 40291575 (-) True bnip3la
TU90912 other downstream 488177 39428281 ~ 39447195 (-) False LOC120560826
TU90908 other downstream 510079 39413882 ~ 39425293 (-) False LOC120560826
TU90909 other downstream 510079 39413882 ~ 39425293 (-) False LOC120560826
TU90911 other downstream 510079 39413882 ~ 39425293 (-) False LOC120560826
unassigned_transcript_272 other downstream 1499882 38435418 ~ 38435490 (-) True trnaf-gaa_7
XR_005639415.1 other upstream 66752 40002598 ~ 40026743 (-) False LOC120560061
TU92028 other upstream 388360 40324206 ~ 40330677 (-) False ppp2r2aa
TU92335 other upstream 988228 40924074 ~ 40950607 (-) True G68952
TU92377 other upstream 1140159 41076005 ~ 41077465 (-) True G68985
TU92249 other upstream 1444542 41380388 ~ 41401901 (-) False LOC120560231

Expression Profile