RNA id: TCONS_00074511


Basic Information

Item Value
RNA id TCONS_00074511
length 630
RNA type mRNA
GC content 0.42
exon number 5
gene id XLOC_037968
representative True

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 33080438 ~ 33081978 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGGTTCATCATGGCAATGCTGAGAAATCTTCTGCTTCTTTCCGTCATGTTCTCCCTGGGGAATGCAGGAATTGGAACATGTCAATGTCCCTATGGATGGTCAAAATTTGGAGTCAAATGCTACAGGTTCATCTCTCAGTCAGTTACCTGGGCCACAGCAGAGAAAAACTGTCAAAGTCTTGGAGCCAATCTTGCTTCTGTGCATAGTAAAGCGGAAAATGATTTTCTACTGAGTCTGATACCTAGTTCCTCCACACGCTGCTGGATTGGTGGCCACGATGGTGAAAATGAAGGAAGGTGGCTGTGGACTGATGGATCTGTGATTGATTACAACAACTGGTGCGCTACAGAGCCTAACAACCAGAATGTTGAGAACTGCATGGAGATGCAGTGGACCGTAAACCGCTGCTGGAACGATCAGGCCTGTTCAACCTCAATGGGCTATATGTGTGCTGCAAACCTGTGAGATCAAATGCAGTCATCCTGCTTCACAGTTACATTGATTTtactacattttcttttttcaatgaTCTCTTTACAAAAATGTTTCTCTGAAATTAAAAATCACCTGAATATCTTCTCAATACCTTCTCTGTAACACTTTTCAGATCAATAAAAGCAAAGCAAAT

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0038023 signaling receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080219-25 Predicted to enable signaling receptor activity. Human ortholog(s) of this gene implicated in type 1 diabetes mellitus. Orthologous to several human genes including REG1A (regenerating family member 1 alpha); REG1B (regenerating family member 1 beta); and REG3A (regenerating family member 3 alpha).

Ensembl:

ensembl_id ENSDART00000165748

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00075393 lncRNA downstream 139212 32937829 ~ 32941228 (-) True XLOC_037966
TCONS_00074505 lncRNA downstream 232956 32846154 ~ 32847484 (-) True XLOC_037963
TCONS_00074504 lncRNA downstream 235553 32844013 ~ 32844887 (-) False XLOC_037963
TCONS_00074500 lncRNA downstream 275532 32801738 ~ 32804908 (-) True XLOC_037960
TCONS_00075000 lncRNA downstream 284556 32772475 ~ 32795884 (-) True XLOC_037958
TCONS_00075394 lncRNA upstream 28423 33110204 ~ 33122114 (-) True XLOC_037970
TCONS_00074515 lncRNA upstream 36833 33118614 ~ 33119756 (-) False XLOC_037971
TCONS_00075395 lncRNA upstream 37443 33119224 ~ 33121673 (-) True XLOC_037971
TCONS_00075396 lncRNA upstream 95867 33177648 ~ 33179016 (-) True XLOC_037973
TCONS_00075397 lncRNA upstream 119734 33201515 ~ 33202904 (-) False XLOC_037974
TCONS_00074508 mRNA downstream 17357 33061564 ~ 33063083 (-) False XLOC_037967
TCONS_00074509 mRNA downstream 17549 33061565 ~ 33062891 (-) True XLOC_037967
TCONS_00074507 mRNA downstream 167802 32895003 ~ 32912638 (-) True XLOC_037965
TCONS_00074503 mRNA downstream 232798 32840114 ~ 32847642 (-) False XLOC_037963
TCONS_00074502 mRNA downstream 242580 32824639 ~ 32837860 (-) True XLOC_037962
TCONS_00074512 mRNA upstream 15508 33097289 ~ 33107237 (-) True XLOC_037969
TCONS_00074513 mRNA upstream 34145 33115926 ~ 33121535 (-) False XLOC_037971
TCONS_00074514 mRNA upstream 34297 33116078 ~ 33121587 (-) False XLOC_037971
TCONS_00074516 mRNA upstream 53101 33134882 ~ 33136990 (-) True XLOC_037972
TCONS_00074517 mRNA upstream 120125 33201906 ~ 33202239 (-) True XLOC_037974
TCONS_00074506 other downstream 195259 32883291 ~ 32885181 (-) True XLOC_037964
TCONS_00074498 other downstream 294903 32785417 ~ 32785537 (-) True XLOC_037959
TCONS_00074494 other downstream 332646 32745088 ~ 32747794 (-) False XLOC_037956
TCONS_00074518 other upstream 165421 33247202 ~ 33249282 (-) False XLOC_037975
TCONS_00074519 other upstream 165582 33247363 ~ 33250079 (-) False XLOC_037975
TCONS_00074520 other upstream 165585 33247366 ~ 33251006 (-) False XLOC_037975
TCONS_00074521 other upstream 167497 33249278 ~ 33250994 (-) True XLOC_037975
TCONS_00074524 other upstream 243091 33324872 ~ 33328944 (-) False XLOC_037976

Expression Profile

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