RNA id: TU92249



Basic Information


Item Value
RNA id TU92249
length 1078
RNA type TUCP
GC content 0.46
exon number 9
gene id LOC120560231
representative False

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41319196 ~ 41401901 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


gtgaacgctggcagttggaaaaacaacgtaatcatggggggcggtccctgttattcccaggtggcacCGATGACATCACATCCAGTATAAATAGAGGAAGTGAATCAGcatttcctcctttccttttgTCTGGAGCACATGGTGTGGTTTAAAGACTCCTCTTTATCTGCAATCATGATCCAATTGCTGAGCGTAGCCATTGTTGCAGGATTGTTCTTTGAAAGCAACCAGCAGACAGTCTGAGGGTCTGACTTAGTTTTACTCCCTAAACCAGGATGCTGGACAGACTGGTTTGACAGAGATGACCCCTCTGGAACTGGAGACTGGGAAACCCTCTCTGATCTTCGCAATGAGTACCCAGGAAAGATCTGCTCTAAACCAGTAGATATTGAGGCGAGAACCCCTCTGGAACTGGAGACTGGGAAACCCTCTCTGATCTTCGCAATGAGTACCCAGGAAAGATCTGCTCTAAACCAGTAGATATTGAGGCGAGAACTCTATCTGGACTCACTGTGGCTGCAGCAGGTGATGTGATTTATGTAAGTGACACCACTACAGGATTTGTCTGCAGGAACCAGGACCAACCCAGGACTAAGATGTGTAATGATTATAGTGTTCGTTTCAGCTGCCCTTCTTTCTGTAAAGTGTGCTGGACCCAGTGGTATAACCGGGACGCTCCCAGTGGAACAGGGGACTGGGAGACTTTGACTAACCTGAGGACAGAAAACCCAGGACAAATCTGTGACAGCCCACTGTCCATTGAGGCTGTTACCACTGACACATTGACCCCAGCCCTCTCCACAGGGCAGACCTTCTTTATTTACAATCAAAATGAGGGATTGGTTTGCCGCAATCGGACCAGAAATCTGGCTTGTTCCCGTGACTACAAAGTTCGGTTTGGGTGCCCATGCTAAGTCCAGACTCCACCGCAACCCGCGAAGGATAAGACTCATCTAATAAATTTTCTCAATTATCTCAGATTTTTCTTGTCATTTCTTTATGACTTATGGTGTCTTATAGAAGAATCATAAAAGGCCATTTTCACAGCAGACGTTTTAATGTAGGAAAGAAGTGTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92394 lncRNA downstream 92643 41174199 ~ 41287745 (-) True G68989
TU92395 lncRNA downstream 126063 41134541 ~ 41254325 (-) False G68989
TU92397 lncRNA downstream 126063 41248200 ~ 41254325 (-) False G68989
TU92424 lncRNA downstream 128300 41228404 ~ 41252088 (-) False G69004
TU92389 lncRNA downstream 139953 41204617 ~ 41240435 (-) False G68987
TU92289 lncRNA upstream 82156 41484057 ~ 41552742 (-) True G68911
XR_005639456.1 lncRNA upstream 116365 41518266 ~ 41520540 (-) True LOC120560251
XR_005639459.1 lncRNA upstream 118669 41520570 ~ 41522489 (-) True LOC120560253
XR_005639458.1 lncRNA upstream 118669 41520570 ~ 41521297 (-) False LOC120560253
TU92466 lncRNA upstream 180609 41582510 ~ 41588526 (-) False G69032
XM_039802516.1 mRNA downstream 18618 41358296 ~ 41361770 (-) True LOC120560235
XM_039802477.1 mRNA downstream 34061 41339172 ~ 41346327 (-) True LOC120560207
XM_039802480.1 mRNA downstream 34064 41339172 ~ 41346324 (-) False LOC120560207
XM_039802478.1 mRNA downstream 34084 41339172 ~ 41346304 (-) False LOC120560207
XM_039802479.1 mRNA downstream 35236 41339172 ~ 41345152 (-) False LOC120560207
XM_039802433.1 mRNA upstream 30693 41432594 ~ 41454486 (-) True LOC120560190
XM_039802494.1 mRNA upstream 86728 41488629 ~ 41496229 (-) True LOC120560221
XM_039802465.1 mRNA upstream 99211 41501112 ~ 41509175 (-) False LOC120560202
XM_039802466.1 mRNA upstream 99262 41501163 ~ 41509175 (-) False LOC120560202
XM_039802467.1 mRNA upstream 100210 41502111 ~ 41513459 (-) False LOC120560202
TU92377 other downstream 302923 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 429781 40924074 ~ 40950607 (-) True G68952
TU92028 other downstream 1049711 40324206 ~ 40330677 (-) False ppp2r2aa
XR_005639415.1 other downstream 1353645 40002598 ~ 40026743 (-) False LOC120560061
TU91941 other downstream 1444542 39935372 ~ 39935846 (-) True G68717
TU92275 other upstream 350635 41752536 ~ 41829133 (-) True G68897
TU92285 other upstream 352971 41754872 ~ 41782162 (-) True G68907
TU92260 other upstream 434646 41836547 ~ 42073980 (-) True G68883
TU92301 other upstream 526587 41928488 ~ 41929179 (-) True G68923
XR_005639438.1 other upstream 696885 42098786 ~ 42107121 (-) False rnf34a

Expression Profile