RNA id: XM_039802511.1


Basic Information

Item Value
RNA id XM_039802511.1
length 2132
RNA type mRNA
GC content 0.42
exon number 11
gene id LOC120560231
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41319196 ~ 41401901 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTTCATCACACCAAACATTGATTTTCAACCATTTTGAATTAGGTCATTATCTTCAAGAACTGTATTTAGAGGGACAGGAGACGGGCTCAATACGCCACACAGACGTTCACACAACCGTTCAACTGAGGAGTCCCGTGGGTGTCTTTATTTTTGCAGAGGTTTAAAGACTCCTCTTTATCTGCAATCATGATCCAATTGCTGAGCGTAGCCATTGTTGCAGGGTTGTTCTTTGAAAGCAACCAGCAGACAGCCAGAGGGTCTGACTTAGTTTTACTCCCGAAACCAGGATGCTGGACAGACTGGTTTGACAGAGATGATCCCTCTGGAACTGGAGACTGGGAAACCCTCTCTCATCTTCGCAATGAGTACCCAGGAAAGATCTGCTCTAAACCAGTAGATGTTGAGGCGAGAACTCTATCTGGTCTCACTGTGGCTGCAGCAGGTGATGTGATTTATCTAAGTGACACCACTACAGGATTTGTCTGCAGGAACGAGGACCAACCCAGGAATAAGATGTGTAATGATTATCGTGTTCGTTTCAGCTGCCCTCCCTCTTTCTGTAAAGGATGCTGGACAGACTGGTTTGACAGAGATGACCCCTCTGGAACTGGAGACTGGGAAACCCTCTCTCATCTTCGCAATGAGTACCCAGGAAAGATCTGCTCTAAACCAGTAGATGTTGAGGCGAGAACTCTATCTGGTCTCACTGTGGCTGCAGCAGGTGATGTGATTTATGTAAGTGACACCACTACAGGATTTGTCTGCAGGAACGAGGACCAACCCAGGAATAAGATGTGTAATGATTATCGTGTTCGTTTCAGCTGCCCTCCCTCTTTCTGTAAAGTGTGCTGGACCAAGTGGTATAACCGGGACGCTCCCAGTGGAACAGGGGACTGGGAGACTTTGACTAACCTGAGGACAGAAAACCCAGGACAAATCTGTGACAGCCCACTGTCCATTGAAGCTGTTACCACTGACACATTGACCCCAGCCCTCTCCACAGGGCAGACCTTCTTTATTTACAATCAAAATGAGGGATTGGTTTGCCGCAATACAGACCAGAAATCTGGCTTGTGCCGTGACTACAAAGTTCGGTTTGGGTGCCCATGCTAAGTCCTGACTCCACAGCAAACGCTGCGAAGGATAAGACCTTTCTCAATTTTCTCAGATTTTTCTTGTCATTTCTTTATAACTTGCGCTTTCTGATAGAATGCATTTAAATTGAATTCAGACATAGATTATTGTATTACTTCTACCATATTGTAAGTGTCTTTACTGATAAAAGGTTGATTATGTGCTTTATCAGTCTTTTCTTTCCAGTAATTTGTGAAATCATTATCTAGTAAtgtaaaatgaattaatattgtaatatgctTGCATGGAGTTATGATTACGTGTGAGCATGCAGACGTATGAGTTTTCAACAGATGCTGGGAACGACTTCATTGATGGTGTCAAATCCCAACAGGATAAGCATAACTGGCAGGGTTAGCCTCacaatttaccttttttttagttttacttTTTTCCAGTTATAACATTGTGGGACCTCTGGAGATTTCCACCCAtagtttacagcttgttccaCTGCCCCTAGGTTGGGTGGTTCCAGTTTGCATGACTTATTACCTGGGTCAGAATGTCACTATCTTCTGGAACTGTATTTAAGTAGAGAGAAGTATACATAAGCCACACAGAGATTTTTTGACTGAGAAGTCGTGTAGGAAAGTCTGTTGGTTTTGCAGAGAGGTAACAGGATGTCTCTTCTGAgcttaatgtttttaattccaTGTAATTTCATAGATATTTAACGGTTTATATTATGAAATGCtatttttgtgaatttgttttaaccctctgaggtctaagccATTTTTTCCCATCTTTGGTTTGCCTGGTCTCGTATAACCTCAACCCTGTGATGCACAATCAAGTTATATACATCATTGATTTCAGGAGAACCTGCGCTCTCAGGATATGTATGCTGCAGGGATGCCGCatgaatgtatacattgttaGGACTATACAGACAGTAGAAAAGACTaaacagaaatgtatttaaatctTTTGGCTTTTGGAAAGTGTTCTAGGTGTTGGGGAAACAGAAATAAACTCTaacaaaagtataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92394 lncRNA downstream 31451 41174199 ~ 41287745 (-) True G68989
TU92395 lncRNA downstream 64871 41134541 ~ 41254325 (-) False G68989
TU92397 lncRNA downstream 64871 41248200 ~ 41254325 (-) False G68989
TU92424 lncRNA downstream 67108 41228404 ~ 41252088 (-) False G69004
TU92389 lncRNA downstream 78761 41204617 ~ 41240435 (-) False G68987
TU92289 lncRNA upstream 101079 41484057 ~ 41552742 (-) True G68911
XR_005639456.1 lncRNA upstream 135288 41518266 ~ 41520540 (-) True LOC120560251
XR_005639459.1 lncRNA upstream 137592 41520570 ~ 41522489 (-) True LOC120560253
XR_005639458.1 lncRNA upstream 137592 41520570 ~ 41521297 (-) False LOC120560253
TU92466 lncRNA upstream 199532 41582510 ~ 41588526 (-) False G69032
XM_039802499.1 mRNA downstream 15439 41299154 ~ 41303757 (-) True LOC120560225
XM_039802498.1 mRNA downstream 16438 41299154 ~ 41302758 (-) False LOC120560225
XM_039802484.1 mRNA downstream 42010 41271917 ~ 41277186 (-) True LOC120560210
XM_039803980.1 mRNA downstream 518501 40799599 ~ 40800695 (-) True LOC120561018
XM_039802147.1 mRNA downstream 654079 40657612 ~ 40665117 (-) True LOC120560039
XM_039802433.1 mRNA upstream 49616 41432594 ~ 41454486 (-) True LOC120560190
XM_039802494.1 mRNA upstream 105651 41488629 ~ 41496229 (-) True LOC120560221
XM_039802465.1 mRNA upstream 118134 41501112 ~ 41509175 (-) False LOC120560202
XM_039802466.1 mRNA upstream 118185 41501163 ~ 41509175 (-) False LOC120560202
XM_039802467.1 mRNA upstream 119133 41502111 ~ 41513459 (-) False LOC120560202
TU92377 other downstream 241731 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 368589 40924074 ~ 40950607 (-) True G68952
TU92028 other downstream 988519 40324206 ~ 40330677 (-) False ppp2r2aa
XR_005639415.1 other downstream 1292453 40002598 ~ 40026743 (-) False LOC120560061
TU91941 other downstream 1383350 39935372 ~ 39935846 (-) True G68717
TU92275 other upstream 369558 41752536 ~ 41829133 (-) True G68897
TU92285 other upstream 371894 41754872 ~ 41782162 (-) True G68907
TU92260 other upstream 453569 41836547 ~ 42073980 (-) True G68883
TU92301 other upstream 545510 41928488 ~ 41929179 (-) True G68923
XR_005639438.1 other upstream 715808 42098786 ~ 42107121 (-) False rnf34a

Expression Profile