RNA id: TU92257



Basic Information


Item Value
RNA id TU92257
length 852
lncRNA type inter_gene
GC content 0.50
exon number 4
gene id G68882
representative False

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41660768 ~ 41701471 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


AAGTTGTGTACCTTATTCAGTGTCAAATATTCCACATATTAGAAGCATAAATTAAGAGTCTCCCAACCTGGGTCTCATAGCTGTCAACCATTTGATGACATTGTCCAGGCTGATTGCGTTCTCCAGCGTTGTCATGACTTCAGGCAACATCAGCAGCATGGAGTAGGAGCTGTTTAAGGGGAGCTGAAGGACTGTAGTCTTCAGCTTGTCGTCGTGATAGGTGTAGAAACTATCCTCCAGATTCATCATGAAGACTGGAACCTTGTGTTCTCGTCCATGTTGAAGTCGTCCTGCTCAGTGAGCTCAGGGTCAAACTGAGTTGCCCACTTTCCTTACCTTTGTAGTAGATGTAGCTGATGAGATACATgactgtgtttggatccaggtCTTCCACCAACTGGTCAATCCTCCCATTGGTCATCTTCTCCTCCATGTACTTATTGATGGTATCAGCACTTTCTGTGGTTTGGTTAAAGTCCACATTGAACCCATCTGTGAAGTACGACTGCTTCAGGGTCTGCAGGAACTCTGGCTTCGGCTTGAAGTCGTCGTCCACGAACACAGCGGTCCCTTCGCTGGCGTCCTCCTGAGATGTGTTGTTGGCCCTCTGGAGGAACGTCTGGAAGGCCTGGTCCACATCTGTCTGCGTCAGGAGGGAGCTGTTGAAGCCCAGACCACTGAAAAGCTGAAGGTGAGTCTCCCCCTGCGCTCCCACGGACAACGCAGCCAAGGCGGCCGACACACTAGCCGGGGAGAAGAAGGTATTCTTTCCCTGTGAGTCAGCATGAGCTGCTAACTGCCTGTAGAGTCGGAAGGAAAACTCTTTGTTTGCTTCGTTCACCAGGGAGACGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_005639463.1 lncRNA downstream 31890 41627519 ~ 41628878 (-) True LOC120560256
TU92467 lncRNA downstream 61814 41584956 ~ 41598954 (-) False G69032
TU92469 lncRNA downstream 69891 41590242 ~ 41590877 (-) True G69034
TU92463 lncRNA downstream 72242 41584956 ~ 41588526 (-) True G69032
TU92496 lncRNA upstream 31898 41733369 ~ 41733800 (-) True G69058
TU92502 lncRNA upstream 41967 41743438 ~ 41744488 (-) True G69062
TU92300 lncRNA upstream 47663 41749134 ~ 41859512 (-) True G68922
TU92295 lncRNA upstream 65532 41767003 ~ 41772727 (-) True G68917
TU92279 lncRNA upstream 126858 41828329 ~ 41859014 (-) True G68901
XM_039802497.1 mRNA downstream 63858 41588921 ~ 41596910 (-) True bag4
XM_039802519.1 mRNA downstream 78416 41572144 ~ 41582352 (-) True LOC120560239
XM_039804054.1 mRNA downstream 111864 41537525 ~ 41548904 (-) True LOC120561099
XM_039802468.1 mRNA downstream 149783 41502111 ~ 41510985 (-) True LOC120560202
XM_039802475.1 mRNA upstream 94790 41796261 ~ 41815906 (-) True pold2
XM_039804056.1 mRNA upstream 136155 41837626 ~ 41858498 (-) True LOC120561103
XM_039804057.1 mRNA upstream 165768 41867239 ~ 41882013 (-) True LOC120561104
XM_039804059.1 mRNA upstream 237510 41938981 ~ 42022357 (-) True LOC120561107
XM_039804060.1 mRNA upstream 332752 42034223 ~ 42047509 (-) True LOC120561108
TU92249 other downstream 258867 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 583303 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 710161 40924074 ~ 40950607 (-) True G68952
TU92028 other downstream 1330091 40324206 ~ 40330677 (-) False ppp2r2aa
XR_005639415.1 other downstream 1634025 40002598 ~ 40026743 (-) False LOC120560061
TU92275 other upstream 51065 41752536 ~ 41829133 (-) True G68897
TU92285 other upstream 53401 41754872 ~ 41782162 (-) True G68907
TU92260 other upstream 135076 41836547 ~ 42073980 (-) True G68883
TU92301 other upstream 227017 41928488 ~ 41929179 (-) True G68923
XR_005639438.1 other upstream 397315 42098786 ~ 42107121 (-) False rnf34a

Expression Profile