RNA id: TU92260


Basic Information

Item Value
RNA id TU92260
length 5113
RNA type TUCP
GC content 0.39
exon number 3
gene id G68883
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41836547 ~ 42073980 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACGTCTGAGTacagtgacagtttttttttggttacaTTACAAATGTCTAAAACTTTTAAATCAAAACACAACATGTAGTTATTCATAAGATTGTATTCTGTTTATAGATATATTTTCCTAAACATAGATTACTAAATAATTCTATTCAGACACCGTAAGAAGGAAACAATCACTAAATGATTTTAAAGTAacataaacaacaaataaatcaTAAATCAGCTATAAAGCGAggaccctctgtgtgtgtgtgtctgtgtgtgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgcgtctgtctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggcgaagGAGGGGCTAATTGACTGTTTCCTGGCTATGACTTTCGCTGCTACCAAGAGTTACATGATGGCTGGATATACCAAAGAAactttcctttattttcctgGAGCGGATAgagcacacgtgtcaaactcaaggcccgcgggccaaatccggccccttgcagatttagatccggcccgtatatcaatctacgttcacaatacatttttgcccgcctagttgtgcgccaaaccaaaaacacaggaaagtgttttttaaactgcaattacctgacattcaaagcagaatatggcagattttgccaactctgagactcagaaattccccgagaagcagagagttttcatattcaggctgtgaaacaaaaatgttatcattgttttgcttgatttgctaaattctctgatggctaaggaactcttttgatgacttttgtagggcttcatttcaacagaaatgtgacaaaaatgtcggaaaaagcaacaaatttacaaaaaggtgacaaatgtctgagaaagccacaaaaaagtctgaacaaaaacaacaaaacgcaaaaaaactctccatgtctggcccttggtgtgattctctttttccagtgtggcccttagtgaaaatgagtttgacacccctggtctagaGGAACAGCCGTCGAGCTACTAAACCTGTAGGGAAGTCACGATACCAAAAATCTAGTTCACAATACTTGATATCAGAGTCGATACCACAGTgtgtataaaaaatataaacatgaaTTCACTAATTCCTTTATATAAAACCTTTTGGGACCTTGGGAAAGTGTCATGTCAACCTTTTTATAGTGtcagcttttgttttgtttccactttctgtcactgttttggtgAGAATTGGAAAGGGAGCGTGATTTAGAGCTGCActatatgaggaaaatatgcgataacgttgttgaatatcacgataacgatataacttgcgataaataaacagacattAAAGTGTAATCtgttctgctgcttttagtattctgctaaaactCACTAAACTGCTGGTTGAGTTTGAAACTAATTTAAAACTTCTTTGAATATATTAGACAggactaaaaaaagaatgagttaTATTATAAAGTGCAATTTTATACGGAAAATTTCTTTCACTAACAAAAAAATCTCTTGAGTGTCTGTTGcaatatgttgcagccttttgcGACGTGTATATTGCGCAAGTTGATATTGTGATACGATAAAAAAtgatattgtgcagccctagagtGATTTACATGTAATCTGGAGAAACCGTAAATCTTCTGGACCAACAGGCCGCTACTTTGGAGCATGGCATCACcacacagctaacgttagcatacggTAACGTCTTCCGTGAGTTCAACTGGAACTCCCAAACAGCAAGCATGGTTGCTTGCTGTTGCTTGctgtgaaacaacaacaacctgctGTTGTTTCACATAAAACTGGGCTGGTAAAAGTAAACTTAACTGACGTTATAGAAGTCTGCTAAAGAAAGCACTAAAGTCAGCTAATGTCAGCTATCGTAGCTAACATTGGGCTCTGTGTGAAAGACAAcgtcagagagaaacagacatacTTTCTGTTTGGGAGTTCCAAGTGAAGTTGAGAAAGCCGTTGCTGTCCATGTAACGTTACGGTAAAGCCAGAGACTGACTGCGGTCCAGCTGTAAGTGAGCACTGTGCACGGAGATGAGGCGCTattctctgtttttctgtgctGTAACGCTTGTAACGTTTTCAGAATTTAGGTTTCAAtaagagcccgaccgatatattggccgatattaggcatttacCAAACTATATATCGGAATAtctgatttttaaatcaccataaATTAGTATCGATATctgccttaaaaatcctttattggTCGGGCTCTCGTTTCGACTTGGTACCAAAGTATCGGTTTTCGTGACATCCCTGTAAGCCTGTTTGAAATGAAtacctctgctgaagtgttcAATTGTTAACGATAGTAAGTCATCAGGTTCGTTGGAGATGAGCCAGTCCttcgcagaatcgatcaccggcgatctccgcccagtgcatgctgggtagatttCTGTCTGATTTGATACAGACTCACTCTGACGTCATGTACATGTTGTCAACAATAACCTCACAAGATTGAAGAGACGGAGTATaatttttatataaacttttctatgttttttaattgtagagattttgactgatatttgtctgatttaagatttgttcaacagaaaaaaaacagaaaacatgttGTGACGTTTAGATACATTCAGATTACAGATAATCTAGtctgttgtattttaacatcagcaacagatcgcctGTAGAGCACAACAGCTACTGTCAGCATCTaaacaagctgatatatgggtctgataccTTTAGAAttaacaggatgtgagtgtttctgtgacttcttGTTTAGACTTaaggctggaaactgtccgacttgaccgCAGCGTTTAGTCACCGCCCAGCAGGGGGCGAGGCGCAGCTCATCTCAAACAAGCCTAGTAGTACACAGTTGTGTTGCTTTGGGGTCCTGTAAATTTTGTTTGgggtacaatggttctggagaaagctatAAGCAGCAATACAAGAGGCCACGCAATCAGTCCGATCCAAACAGACACGTTTTGAACGAGCTAATTTTAGATATAATGACAAATGATTATTGAAATTCAGATTCAGTtgctttccttttttaagatacattttAGCTGCAGCGCTACAGAACTCTACATTACATCAGCCACCATGGAAACTGATTCTGCATCAGCATTTGTTTCTGTGACTTTTGCTTTTTTGCCCTAAAACTGATGTTCGGtgtgtttgtaaaatgaaaACTCAGCCTAAGAGGACATGAATGATCCGGATAACTACTTCTGTCTTAACTGACACTCTTGCAGCAGCCGGTCCACCGACACCTCCTGATCTCTAAAACCCAACTTCAAATGACCACATTCATTCTCATCGCTGATCCAGCCTTGCAGTGTAATTTTAATAGTAGTTTGCTTAAGTCCAAATGAAGTCAGGAGAACTCTGTCAGACAAAAGTTGGCAGTCAAATGGCAGCGTTAACTGTGAGCTTATGTACAAGACGTCTGTAGCGTTGTCTTTGGCACAGTTATCAACCGTGACTGAACCGTTGTTGAAAGCCAACATGTAAATGTCATTTCCATCACCACCGGTAGCGATTACCTGGTCGGTGGTGATGGAAATGACATTTACATGTTGGCTTTCAACAACGGTTCAGTCACGGTTGATAACTGTGCCAAAGACAACGCTACAGACGTCTTGTACATGAGCTCACAGTCAACGCCGCCATTTGACTGCCAACTTTTGTCTGATAGAGTTCTCCTGACTTTCTTTGGACTTAACCAAACTATAGTTAAAATTACACTGCAGGGCTGGATCAATGATGAGAACGAATGTGGTCATTTGAAGTTGATTTTTAGAGATCAGGAGGTGTCGGTGGACCGGCTGCTGCAAGAGTGTCAGTTAAGACAGCTGGAAAAATGTCCTCTTTTGCTGGGTTTTCCTTTgtgcaaacaagcaaaaaaacaacaacaagagaTATGGGAACAACTAGAAACAAATGTTGATTCAATTTCTATGCTGGCTGATATAGTTTAATCTTTAAAAGCGAGGACACAGTTTCTGAAATTCCTTGATCATTTGTCATTTTATCTTAACTAAGGCCGTGCCCTTTCAAACGTGTCTGTTTAGGACTGATTGTTTGGCCTCCTGTCTTGCTGTttgtagctttctccagaacaATTGTACTCCAAAATGACTTAAAGAAGGACCCCAAAGCAACCCACTGTATACTACTAGGCTTgttttagatgagctgcgcctcGCCCCCTGCTGGGTGGTGACAAAAAGCTGTGGTCAAGTTAGACAGTTTTCAGCCTTCAGTCTGAACAGGAATTTACATAAGCACTCACTTCCTGTTAAGTCTGATTtggatttattaaaatgttatcagacccatatatccaCTTTAGATtctgacagagtagctgttaaAACTCTCTGCACGCAATCTGCTGCTGATGTCATTAaacagcatttaaacaaagtatctttaaatcagacaaatattaATCAGAAACtctccaaatataaaaaaatgaaaaatgtatgtaaaaccTAATTTTGCACCTCTTTGATCTTGTGAGGTCATTGTTGCCCATGTGCATGACGACAGCGAGTGAGGATCAATTTGGACCCAAATCAATCATTTCTGCGCAGGCCTAGCTGATCTCCAACAAACCTGATAACTTACTATCGTTAACAATTTAACACTTGAGCAGAGGTATTCATTCTCAGCATCGGTCAGGTCAGTTCCACAGTTAATTTTAGAAAGTTTTGTGTTGAAACTCCATCAAAATTGAGATACTGCCTCATTGGGTACCCAACAATACACCCGgcaagtgtgaagtagatcgGATGAACAGTTAATGTAAACAAATGTTATTTAGTGAATAACAAACCTCTTCTACTTAAGGGCACGGTGTCTGATTTGGATTATTTAGTAATCTATGTTGAGGAAAATATATCCATAAAATGAATACAATCAATACAATCAATTATAAACTACATATTgtgttttgatttaaaaagttTTAGACAATTTTAATGTAGCCgaacaaaaactgtaactgtactcaaatgtttttataatcaaATGGATCCTTTATGCTTT

Function

GO: NA

KEGG:

id description
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92295 lncRNA downstream 63820 41767003 ~ 41772727 (-) True G68917
TU92502 lncRNA downstream 92059 41743438 ~ 41744488 (-) True G69062
TU92496 lncRNA downstream 102747 41733369 ~ 41733800 (-) True G69058
TU92257 lncRNA downstream 135076 41660768 ~ 41701471 (-) False G68882
TU92252 lncRNA downstream 135076 41700054 ~ 41701471 (-) False G68882
TU92297 lncRNA upstream 16093 42090073 ~ 42090529 (-) True G68919
TU92562 lncRNA upstream 38812 42112792 ~ 42113892 (-) False G69104
TU92563 lncRNA upstream 39264 42113244 ~ 42114759 (-) True G69104
TU92572 lncRNA upstream 135958 42209938 ~ 42223138 (-) True G69110
TU92596 lncRNA upstream 292049 42366029 ~ 42443845 (-) True G69127
XM_039802475.1 mRNA downstream 20641 41796261 ~ 41815906 (-) True pold2
XM_039802497.1 mRNA downstream 239637 41588921 ~ 41596910 (-) True bag4
XM_039802519.1 mRNA downstream 254195 41572144 ~ 41582352 (-) True LOC120560239
XM_039804054.1 mRNA downstream 287643 41537525 ~ 41548904 (-) True LOC120561099
XM_039802468.1 mRNA downstream 325562 41502111 ~ 41510985 (-) True LOC120560202
XM_039802472.1 mRNA upstream 4606 42078586 ~ 42094518 (-) False LOC120560203
XM_039802471.1 mRNA upstream 4606 42078586 ~ 42094518 (-) False LOC120560203
XM_039802470.1 mRNA upstream 4606 42078586 ~ 42094518 (-) True LOC120560203
XM_039802501.1 mRNA upstream 24347 42098327 ~ 42107117 (-) False rnf34a
XM_039802500.1 mRNA upstream 24347 42098327 ~ 42107116 (-) True rnf34a
TU92275 other downstream 7414 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 54385 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 434646 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 759082 41076005 ~ 41077465 (-) True G68985
TU92335 other downstream 885940 40924074 ~ 40950607 (-) True G68952
XR_005639438.1 other upstream 24806 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 26395 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 33650 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 38812 42112792 ~ 42114159 (-) False G69104
TU92567 other upstream 56631 42130611 ~ 42132581 (-) True G69105

Expression Profile