RNA id: TU92297



Basic Information


Item Value
RNA id TU92297
length 221
lncRNA type intronic
GC content 0.49
exon number 2
gene id G68919
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42090073 ~ 42090529 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atacacacacacacatacacacacacagacacacacacacagacacagacacacacacacacacagacacagacacacacacacacacagagacacacacacacagacacacacacacacacacacacacacacagagacacacacacacacagagacacacacacacagacacagcacacacacacacacacacacagacacagacacacacacacacac

Function


GO: NA

KEGG:

id description
ko00830 Retinol metabolism

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92303 lncRNA downstream 153 42044916 ~ 42089920 (-) True G68925
TU92292 lncRNA downstream 47409 42039860 ~ 42042664 (-) True G68914
TU92552 lncRNA downstream 50608 42038990 ~ 42039465 (-) True G69094
TU92293 lncRNA downstream 96582 41988436 ~ 41993491 (-) True G68915
TU92542 lncRNA downstream 97651 41956372 ~ 41992422 (-) True G69087
TU92562 lncRNA upstream 22263 42112792 ~ 42113892 (-) False G69104
TU92563 lncRNA upstream 22715 42113244 ~ 42114759 (-) True G69104
TU92572 lncRNA upstream 119409 42209938 ~ 42223138 (-) True G69110
TU92596 lncRNA upstream 275500 42366029 ~ 42443845 (-) True G69127
TU92599 lncRNA upstream 305552 42396081 ~ 42413217 (-) True G69129
XM_039804060.1 mRNA downstream 42564 42034223 ~ 42047509 (-) True LOC120561108
XM_039804059.1 mRNA downstream 67716 41938981 ~ 42022357 (-) True LOC120561107
XM_039804057.1 mRNA downstream 208060 41867239 ~ 41882013 (-) True LOC120561104
XM_039804056.1 mRNA downstream 231575 41837626 ~ 41858498 (-) True LOC120561103
XM_039802475.1 mRNA downstream 274167 41796261 ~ 41815906 (-) True pold2
XM_039802501.1 mRNA upstream 7798 42098327 ~ 42107117 (-) False rnf34a
XM_039802500.1 mRNA upstream 7798 42098327 ~ 42107116 (-) True rnf34a
XM_039802504.1 mRNA upstream 8242 42098771 ~ 42107121 (-) False rnf34a
XM_039802503.1 mRNA upstream 9798 42100327 ~ 42107121 (-) False rnf34a
XM_039804062.1 mRNA upstream 21219 42111748 ~ 42136339 (-) True LOC120561110
TU92260 other downstream 16093 41836547 ~ 42073980 (-) True G68883
TU92301 other downstream 160894 41928488 ~ 41929179 (-) True G68923
TU92275 other downstream 260940 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 307911 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 688172 41380388 ~ 41401901 (-) False LOC120560231
XR_005639438.1 other upstream 8257 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 9846 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 17101 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 22263 42112792 ~ 42114159 (-) False G69104
TU92567 other upstream 40082 42130611 ~ 42132581 (-) True G69105

Expression Profile