RNA id: TU92541



Basic Information


Item Value
RNA id TU92541
length 634
lncRNA type intronic
GC content 0.46
exon number 2
gene id G69086
representative True

Chromosome Information


Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 41947779 ~ 41948550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GCCggtttgaatgggaaaatgtcatccacgtgaatcgtgtagatccgaagagtttttattgTTTGGGGAGGGGTGGGGTCCGAGACCGGAGACCCAAGAACGGTGCTAATTAAGCCGgggccttaacgaccgttatctaccggattGAACAGCAACTctgatttcggtgccttatttaggtgccacttaaatgcctccgcttctctctgatgctccgaaaacggacgttagaggaaAACTGAAACATcaccgcacgggacgctagttacgGTAACACCACAatcaacagcaggtaacgttagcctaccgttagctagttaagattacacctgacagcaggtaacgttagctagttaatactacacctgacagcaggtaacgttagctaccgttatctagttaacactacacttgacagcaggtaacgttagctaccgttagctagttaacactacacttgacagcaggtaacgttagctaccgttagctagttaacactacacttgacagcaggtaacgttagctaccgttagctagttaacactacactcaacagcaggtaacgttagctaccgttatctagttaacactacacttgacagcaggtaacgttagcctaccgttagctagttaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU92538 lncRNA downstream 8255 41939146 ~ 41939524 (-) False G69085
TU92540 lncRNA downstream 8255 41939146 ~ 41939524 (-) True G69085
TU92280 lncRNA downstream 11535 41935506 ~ 41936244 (-) True G68902
TU92305 lncRNA downstream 19748 41927734 ~ 41928031 (-) True G68927
TU92522 lncRNA downstream 44157 41902901 ~ 41903622 (-) False G69078
TU92542 lncRNA upstream 7822 41956372 ~ 41992422 (-) True G69087
TU92293 lncRNA upstream 39886 41988436 ~ 41993491 (-) True G68915
TU92552 lncRNA upstream 90440 42038990 ~ 42039465 (-) True G69094
TU92292 lncRNA upstream 91310 42039860 ~ 42042664 (-) True G68914
TU92303 lncRNA upstream 96366 42044916 ~ 42089920 (-) True G68925
XM_039804057.1 mRNA downstream 65766 41867239 ~ 41882013 (-) True LOC120561104
XM_039804056.1 mRNA downstream 89281 41837626 ~ 41858498 (-) True LOC120561103
XM_039802475.1 mRNA downstream 131873 41796261 ~ 41815906 (-) True pold2
XM_039802497.1 mRNA downstream 350869 41588921 ~ 41596910 (-) True bag4
XM_039802519.1 mRNA downstream 365427 41572144 ~ 41582352 (-) True LOC120560239
XM_039804060.1 mRNA upstream 85673 42034223 ~ 42047509 (-) True LOC120561108
XM_039802472.1 mRNA upstream 130036 42078586 ~ 42094518 (-) False LOC120560203
XM_039802471.1 mRNA upstream 130036 42078586 ~ 42094518 (-) False LOC120560203
XM_039802470.1 mRNA upstream 130036 42078586 ~ 42094518 (-) True LOC120560203
XM_039802501.1 mRNA upstream 149777 42098327 ~ 42107117 (-) False rnf34a
TU92301 other downstream 18600 41928488 ~ 41929179 (-) True G68923
TU92275 other downstream 118646 41752536 ~ 41829133 (-) True G68897
TU92285 other downstream 165617 41754872 ~ 41782162 (-) True G68907
TU92249 other downstream 545878 41380388 ~ 41401901 (-) False LOC120560231
TU92377 other downstream 870314 41076005 ~ 41077465 (-) True G68985
XR_005639438.1 other upstream 150236 42098786 ~ 42107121 (-) False rnf34a
XR_005639437.1 other upstream 151825 42100375 ~ 42107122 (-) False rnf34a
TU92299 other upstream 159080 42107630 ~ 42116261 (-) True G68921
TU92564 other upstream 164242 42112792 ~ 42114159 (-) False G69104
TU92567 other upstream 182061 42130611 ~ 42132581 (-) True G69105

Expression Profile