RNA id: XM_039804064.1


Basic Information

Item Value
RNA id XM_039804064.1
length 5340
RNA type mRNA
GC content 0.48
exon number 20
gene id LOC120561114
representative True

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 42663363 ~ 42809622 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAGTAAACAAGGCTGCTGGCCGTAGCGTTAGCTGCATGCTGCTGTTGAATGAGCTGGAAGACGGTATTGTAGTCGTAGAGCAGATGATTCTTTCAGCTGGAACTAAGCAACAATGTCTTCAGTTGAGTGTTTGAGAGAGTTTGTCACCGAGCgactaactgctgctgctgaagaaatattccgagttgttgaaaaaactaTCGTCGAGTACGAGGAAGAGATCGCTCGGCAGCGCAGACTGTTGGATGGCGTTTGGAGACCAGAAATCAGGTTACACAGGATAGAGCTCCCACAGCAACATGGCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGATCCTCCACAAATTACAGAGGACCAGGAGGAACTGTGcaccagtcaggagggagagcagcttgtaCAGAAGCAGGAGACTGATACCTTTCGTCACAGTAACAACATAAACAACAGTGACATGTCAGAGATTCACCGTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAGAGGACCAGGAGGAACTGTGcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTCTAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCACCATGCCAGTTATAACCTCTGTGGAATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGTAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACGTGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTTTTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAGAGGACCAGGAGGGACTGTGcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTATATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTCTAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACATAGACAACACTAACGTGTCAGAGATTCACCCTAAAACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGGAGCTCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTAATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAgtcacagcaacaacaacactaACATGTCAGAGATTCACTGTAATTCTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAAGACCCAGAGCCTCCACAGATTAAAgatgaacaggaggaactgtgcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTATGTGCAGCAGAGAAGGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGAATCCGAAGCAAACAGTGACTACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACAAAACAAGAGCAGAAGTCACAGCAACAACTTAGACAACACTAAGGTGTCAGAGATTCACCCTAATACTCCAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCTGTATTCAGGAGAGGAACTCCAGTCTGGACCAAGAGGACCCAGAGCCTCCACAGATTAAAGAGGACCAGGAGGAACTGTGcaccagtcaggagggagagcagcttgtaCTGAAGCAGGAGACTGATACCTTTATGTTGACTCCTACTTATGAGGAAAGGGACCACAGTGAAGGTCAGACTCTGAACTTCAATCCTGATGATGACACTCTAAGTGCAGCAGAGAAAGAGTCTGTAGCCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGAAGACAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGTCAACGCAAGAGCAGAAGTCACAGTAACAATGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGATCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCCAACAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTACAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAAAACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCACGGAGACTCAGCAACAACTAGAAATGCGGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGTAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGAAGACGCAAGAGCAGAAGTCACAGCAACAACGTACACAACACTAACGTGTCAGAGATTCACCCTAATACTCCAACAGAGCTCCCACAGCAACATGTCtgcaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTCTAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGACAGAACCAAAGAAGAGACGACGCAAGAGAAGAAGTCACAGTAACAACGTAGACAACACTAACGTGTCAGAGATTCACCCTAAAACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCACAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGATCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGACGACGCAAGAGCAGAAGTCACAGTAACAACGTAGACAACACTAACTTGTCAGAGATTCACCCTAATACTCAAACAGAGCTCCCACAGCAACATGTCtgtaaggaggaggaggttctCTCTGACCAGCAGCTCAACATGCCAGTTATAACCTCTGTGGTATCAGAAGCAAACAGTGACCACCAGCTCCTCTCTCCCAACTCTCATGAAGCTGAGAGCCAAGATCAGAAAGGAGGCAAGCATGGAGACTCAGGACCAACTAGAAATGCAGAGCCAGAACCAAAGAAGAGAAGACGCAAGAGCAGAAGTCACAGCAACAACGTAGACAACACTAACGTGTCAGAGAtTCACCCTAATACTCAAACAGGTAAAAAGTCTTTCATATGTGACACATGTGGGAAAGACTTAAACCTGTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92668 lncRNA downstream 7441 42653635 ~ 42655922 (-) True G69175
TU92673 lncRNA downstream 11957 42650291 ~ 42651406 (-) True G69179
TU92671 lncRNA downstream 14336 42648760 ~ 42649027 (-) True G69177
TU92659 lncRNA downstream 29638 42615221 ~ 42633725 (-) True G69169
TU92638 lncRNA downstream 124179 42538779 ~ 42539184 (-) True G69149
XR_005639465.1 lncRNA upstream 160877 42970466 ~ 42971625 (-) True LOC120560258
TU92740 lncRNA upstream 161537 42971126 ~ 43014065 (-) True G69229
TU92776 lncRNA upstream 197270 43006859 ~ 43096619 (-) True G69250
TU92780 lncRNA upstream 211543 43021132 ~ 43022838 (-) True G69254
TU92785 lncRNA upstream 227958 43037547 ~ 43038477 (-) True G69258
XM_039802513.1 mRNA downstream 1344 42658356 ~ 42662019 (-) True LOC120560234
XM_039802515.1 mRNA downstream 1840 42658356 ~ 42661523 (-) False LOC120560234
XM_039802434.1 mRNA downstream 392152 42262425 ~ 42271211 (-) True LOC120560191
XM_039802496.1 mRNA downstream 406479 42241736 ~ 42256884 (-) True hpdb
XM_039802485.1 mRNA downstream 450661 42209201 ~ 42212702 (-) True LOC120560212
XM_039802518.1 mRNA upstream 10285 42819874 ~ 42822645 (-) True LOC120560237
XM_039804065.1 mRNA upstream 12816 42822405 ~ 42854342 (-) True LOC120561115
XM_039802439.1 mRNA upstream 64308 42873897 ~ 42958273 (-) False LOC120560194
XM_039802438.1 mRNA upstream 64308 42873897 ~ 42958273 (-) True LOC120560194
XM_039802527.1 mRNA upstream 192908 43002497 ~ 43025050 (-) True chek2
TU92624 other downstream 127288 42535267 ~ 42536075 (-) False G69140
TU92567 other downstream 530782 42130611 ~ 42132581 (-) True G69105
TU92299 other downstream 547102 42107630 ~ 42116261 (-) True G68921
TU92564 other downstream 549204 42112792 ~ 42114159 (-) False G69104
XR_005639437.1 other downstream 556241 42100375 ~ 42107122 (-) False rnf34a
TU92739 other upstream 160495 42970084 ~ 43014065 (-) False G69229
TU92741 other upstream 160495 42970084 ~ 43014065 (-) False G69229
TU92743 other upstream 192666 43002255 ~ 43003347 (-) False chek2
TU92737 other upstream 194997 43004586 ~ 43018251 (-) False chek2
TU92794 other upstream 268263 43077852 ~ 43088827 (-) False card9

Expression Profile